BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328817

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28820.1 | Symbols:  | HIT-type Zinc finger family protein |...   782    0.0  


> AT4G28820.1 | Symbols:  | HIT-type Zinc finger family protein 
| chr4:14230695-14232305 REVERSE LENGTH=660
Length=660

 Score =  782 bits (423),  Expect = 0.0
 Identities = 490/523 (94%), Gaps = 2/523 (0%)
 Strand=Plus/Plus

Query  1    ATGTGTCCTCGAGCTGCTCCAACATGCGATATCTGCAAGAAGCTTGTATCCAAATACAAG  60
            ||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||
Sbjct  19   ATGTGTCCTCGAGCTACTCAAACATGCGAAATCTGCGAGAAGGTTGTATCCAAATACAAG  78

Query  61   TGTCCTTCTTGTCTTGTTCCTTACTGCTCATTGGGTTGTTTCAAGATTCACAAAGAGACT  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  79   TGTCCTTCTTGTCTTGTTCCTTACTGCTCATTGGGTTGTTTCAAGATACACAAAGAGACT  138

Query  121  CCATGTGCTAAACCTTCTGGTCCTTCTTCAACAGAGGATAAGCCAGCAGCTTCTCCAGTA  180
            |||||||||||||| |||| |||||||||||| || || ||||||||||||||||||| |
Sbjct  139  CCATGTGCTAAACCGTCTGATCCTTCTTCAACCGAAGAAAAGCCAGCAGCTTCTCCAGCA  198

Query  181  AAGGAAGTCCCGGTGGAAAGACCTGAGGAAGCTAATGATGTAGTAGAGAAGACACAGCAC  240
            ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  199  AAGGAAGTCCCGGTGAAAAGACCTGAGGAAGCTAATGATGTTGTAGAGAAGACACAGCAA  258

Query  241  AATGCTAGTGCTGCATCTACAGCAAAGGAAATTCTGGTAGCAAGACCGATACAT-GTAGA  299
            || ||||||||||||||| |||| |||||||||| |||||||||||||||| || |||||
Sbjct  259  AAGGCTAGTGCTGCATCTCCAGCGAAGGAAATTCCGGTAGCAAGACCGATA-ATTGTAGA  317

Query  300  GGACGAAAAGTATGTTTTAGAAAAGACACAGTTCGAGGCTATCGCTTCTTCTAGTGAAAT  359
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  GGAAGAAAAGTATATTTTAGAAAAGACACAGTTCGAGGCTATCGCTTCTTCTAGTGAAAT  377

Query  360  CCGAGAAGCTCTTAAGGATGAAGCTCTTCAGAAACTCATATACAGTATTGATAGTTCTTC  419
            ||| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  378  CCGCGAAGCTCTAAAGGATGAACCTCTTCAGAAACTCATCTACAGTATTGATAGTTCTTC  437

Query  420  CAACCCTTTACAGGAACTCGATGGAGCCATGGGTATAGAAGCTTTCCGCGAATTCACAAA  479
            ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |
Sbjct  438  CAACCCTTTACAGGAACTCGATGAAGCCATGGGAATAGAAGCATTCCGCGAATTCACAGA  497

Query  480  CAAGATTCTATCAAACATTTCGAAGAGTAATGACGAACAGTGA  522
            ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  498  CAAGATTTTATCAAACATTTCGAAGAGTAATGACGAGCAGTGA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5