BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328819
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28770.2 | Symbols: | Tetraspanin family protein | chr4:142... 1205 0.0
AT2G20230.1 | Symbols: | Tetraspanin family protein | chr2:872... 473 9e-133
> AT4G28770.2 | Symbols: | Tetraspanin family protein | chr4:14211855-14213969
REVERSE LENGTH=1373
Length=1373
Score = 1205 bits (652), Expect = 0.0
Identities = 787/848 (93%), Gaps = 25/848 (3%)
Strand=Plus/Plus
Query 1 ATGCGACACAATTGTTGCCATGTCTCGTTCGCTTCCATTCTCAAGATCCTCAATTTTCTC 60
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 206 ATGCGACACAATTGTTGCCATGTCTCGTTCGCTTCGATTCTCAAGATCCTTAATTTTCTC 265
Query 61 CAAGCTTTCATCGGTATCTCAATCATAATCTACTCGATTTGGATGCTCGATCAATATAAC 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 266 CAAGCTTTCATCGGTATATCAATCATAATCTACTCGATTTGGATGCTCGATCAATACAAT 325
Query 121 CATCACGTTCCCGTTGATCCTCCTCCGTCTCAGCCTCCGGCGGCTTCATCTCCGGA---T 177
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |
Sbjct 326 CATCACGTTCCCGTTGACCCTCCTCCGTCTCAGCCTCCGGCAGCTTCATCACCGGATTCT 385
Query 178 TC---TT-CTTCT-T-ATTCAAGAATTGAGATCAACAGTGTTTCTGATTCTTTGAAGAAT 231
|| || ||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 386 TCTTATTCCTTCTCTAATTCAATAATTGAGATCAACAGTGTTTCTGATTCTTTGAAGAAT 445
Query 232 CCGATTAATCTCGTATCGGGTATCG-T-TC---TC-------GGAGATTCGGGTTTCAAT 279
||||| || ||||||||||||||| | || || ||||||||||||||||||
Sbjct 446 CCGATCGATTTCGTATCGGGTATCGTTCTCGGGTCTGGTGGTGGAGATTCGGGTTTCAAT 505
Query 280 CTCCGTTCCTTAGATCTTCCTGCTCCATGGTTTATTTACTCTTTCATGGCCATTGGGATT 339
|||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 506 CTCCGTTCTTTAGATCTTCCTGCTCCATGGTTTATCTACTGTTTCATGGCGATTGGGATT 565
Query 340 TTGGTCTGCATTGTCACTATCATCGGTTTCATTGCAGCTGAAGCTATCAATGGATGTTGC 399
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 566 TTGGTCTGCATTGTCACTATCATTGGTTTCATTGCAGCTGAAGCTATCAATGGATGTTGC 625
Query 400 TTGTGTTTCTATTCAATTCTCAAAACTCTTCTGATCAT-ACTCGAAGCAGCTCTTGTGGG 458
|||||||||||||||||||||||||||||| | ||||| | ||||||||||||| |||||
Sbjct 626 TTGTGTTTCTATTCAATTCTCAAAACTCTTTTAATCATTA-TCGAAGCAGCTCTAGTGGG 684
Query 459 ATAT-ATAGCCATTGACCGTCACTGGGAAAAGGATCTTCCTTATGATCCAACTGGAGAAC 517
|| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 685 AT-TCATAGTGATTGACCGTCACTGGGAGAAGGATCTTCCTTATGATCCAACTGGAGAAC 743
Query 518 TCAATAGTCTTCGAGCTTTCATAGAAGAAAACATCGATATTTGCAAATGGGTCGGGATTG 577
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 744 TCAATAGTCTTCGAGCTTTCATCGAAGAAAACATCGATATTTGCAAATGGGTCGGAATTG 803
Query 578 TTGTGGTAGCGATCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAGAGCTATGGTTT 637
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTGTGGTAGCCATCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAGAGCTATGGTTT 863
Query 638 CACCCCGACAATCAGAGCTTGATGATGAGGATGATTTTGAGAATCCAATGAGTAGAGCAA 697
|||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 864 CACCTCGGCAATCAGAGCTTGATGATGAAGATGATTTTGAGAATCCGATGAGTAGAGCAC 923
Query 698 GAGAGAATCTTCTTGGTCCACAGGCAAACCAGACATCTTCTGGATCAAGCAATATTGACA 757
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GAGACAATCTTCTTGGTCCACAGGCAAACCAGACATCTTCTGGATCAAGCAATATTGACA 983
Query 758 ATTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGATCAACGGTCAGAGCCAGAATCCAT 817
| ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 984 ACTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGATCAACAGTCAGAGCCACACTCCAT 1043
Query 818 CAGCTTAA 825
||||||||
Sbjct 1044 CAGCTTAA 1051
> AT2G20230.1 | Symbols: | Tetraspanin family protein | chr2:8725541-8727742
FORWARD LENGTH=1388
Length=1388
Score = 473 bits (256), Expect = 9e-133
Identities = 442/531 (83%), Gaps = 15/531 (3%)
Strand=Plus/Plus
Query 270 GGGTTTCAATCTCCGTTCCTTAGATCTTCCTGCTCCATGGTTTATTTACTCTTTCATGGC 329
|||||| || || || || || || ||||||||||||||||| || ||||||||||||||
Sbjct 480 GGGTTT-AACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGC 538
Query 330 CATTGGGATTTTGGTCTGCATTGTCA-CTATCATCGGTTTCATTGCAGCTGAAGCTATCA 388
|||| || |||||||||||||| | || |||| |||||||| ||||||||||| ||||
Sbjct 539 GGTTGGTATATTGGTCTGCATTGTTACCT-TCATTGGTTTCATAGCAGCTGAAGCAATCA 597
Query 389 ATGGATGTTGCTTGTGTTTCTATTCAATTCTCAAAACTCTTCTGA-TCATACTCGAAGCA 447
|||| |||||||||||||| || || |||||||||||||| || | || |||| |||||
Sbjct 598 ATGGCTGTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTC-TACTTGAAGCT 656
Query 448 GCTCTTGTGGGATATATAGCCATTGACCGTCACTGGGAAAAGGATCTTCCTTATGATCCA 507
|| ||||| | ||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 657 GCACTTGTTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCA 716
Query 508 ACTGGAGAACTCAATAGTCTTCGAGCTTTCATAGAAGAAAACATCGATATTTGCAAATGG 567
||||||||||| | ||||||| | |||||||| ||||||||||||||||| |||||||||
Sbjct 717 ACTGGAGAACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGG 776
Query 568 GTCGGGATTGTTGTGGTAGC-GATCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAG 626
|| ||||||| ||||||||| | ||||| |||||||||||||||| || ||||| | ||
Sbjct 777 GTGGGGATTGCTGTGGTAGCAG-TCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAG 835
Query 627 AGCTATGGTTTCA-CCCCGACAATCAGAGCTTGATGATGAGGATGATTTTGAGAATCCAA 685
||| ||||||||| |||||| || | || ||||| || ||||| ||| |||||| ||||
Sbjct 836 AGCGATGGTTTCAACCCCGA-AACCCGAACTTGACGAAGAGGAAGATGATGAGAACCCAA 894
Query 686 TGAGTAGAGCAAGAGAGA-ATCTTCTTGGTCCACA-GGCAAACCA-GACATCTTCTGGAT 742
||||||| | | || | ||||||||||| || || |||||| | | || |||| |
Sbjct 895 GGAGTAGAACTTGGGACCCA-CTTCTTGGTCCGCAAGG-AAACCAAG-CGCCTGCTGGCT 951
Query 743 CAAGCAATATTGACAATTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGA 793
||||||| ||||| || ||||| |||||||||||||| ||||| || ||||
Sbjct 952 CAAGCAAGATTGAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5