BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328829
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28690.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1293 0.0
> AT4G28690.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has
455 Blast hits to 438 proteins in 127 species: Archae - 0;
Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses
- 3; Other Eukaryotes - 59 (source: NCBI BLink). | chr4:14158950-14160979
FORWARD LENGTH=1593
Length=1593
Score = 1293 bits (700), Expect = 0.0
Identities = 919/1021 (90%), Gaps = 29/1021 (3%)
Strand=Plus/Plus
Query 1 ATGACTTCGATGAATCATATCGTTGTAGATGTCAGTTCGGACGAAGACGATGACAAACCA 60
|||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 144 ATGAGTTCGATGAATCATATCGTTGTAGATGTTAGTTCGGACGAAGATGATGATAAACCA 203
Query 61 GTAGATTACTCTTATTTGTTCGA-CGAAATTCTGGGAATTTCCGATGAGAAGAAACCCAT 119
|||||||||||||||||||| || || |||||||||| ||||||||||||||||||||||
Sbjct 204 GTAGATTACTCTTATTTGTTAGACCG-AATTCTGGGAGTTTCCGATGAGAAGAAACCCAT 262
Query 120 CAAAAGTACTGATTTGTTGAATCCAAC----G-G--TG--GACGACGACGACGATTGTGT 170
|||| |||||| ||||||||||||||| | | || |||||||| |||||||||||
Sbjct 263 CAAAGGTACTGTTTTGTTGAATCCAACGGTGGAGAATGAAGACGACGATGACGATTGTGT 322
Query 171 GATTTTGGATTGTGATCCTACGGCGAAGGAGACTGCGATTGAAACTTGTGGAACTGATGA 230
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 323 GATTTTGGATTTTGATCCTACGGCGAAGGAGACTGTGATTGAAACTTGTGAAACTGATGG 382
Query 231 AGTTCTTGTAGTTGGGCAAAAGGGTGAGATAGCTTGTAGGGATTTTCCGCATCCGCGACA 290
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 383 AGTTCTTGTAGTAGGACAAAAGGGTGAGGTAGCTTGTAGGGATTTTCCGCATCCGCGACA 442
Query 291 TGCTTGCGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTCTGTGAGATGTGTCA 350
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 443 TGCTTGTGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTTTGTGAGATGTGTCA 502
Query 351 CTGTTATGTTTGTGACACTCGTGCTCCGTGTCCTTACTGGTTTAGTGGTGGGATCTCCAA 410
|||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 503 CTGTTATGTTTGTGACACCCGTGCTCCGTGTACTTACTGGTTCAGTGGCGGGATCTCTAA 562
Query 411 CATTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAA-GAATCAACGGGAATGCA 469
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 563 CACTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAATGA-TCAACGGGAATGCA 621
Query 470 TCAGGACCAGAAATATGCTACCTCGACCTGTTTCGAAACCTGCCTCGACCAAATTACAAT 529
|||| || |||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 622 TCAGAACTGGAAATATGTTACCTCGACCTGTTTCGAAACCTGCTTCGGCCAAATTACAAT 681
Query 530 TTAAACG-GCCTCCACGGCGTCGATCTGT-TCCTGTACCTGTTCCGTCGCTCAAAAACTC 587
||||||| || ||||||||||| |||||| | ||||||||| |||| |||| |||||||
Sbjct 682 TTAAACGTGC-TCCACGGCGTCCATCTGTATA-TGTACCTGTACCGTTGCTCCAAAACTC 739
Query 588 GTCTTCCCCTGGAACCCAGTTTGGAATCCGGGCTTGCTCCACAGCTACTA-GGCTTGCAA 646
|||| |||||| | || ||||||||||||||||||| | |||||| || ||||||
Sbjct 740 GTCT------GGAACCAACTTAGGAATCCGGGCTTGCTCCAAATCTACTAAGG-TTGCAA 792
Query 647 CTCACCGAAAAAGATACACCAGACCCGGTTATAGAACCGAGCAATCAAGAACCCTCCAGC 706
||||| ||||| |||||| ||||||||| ||||||||||||||||||||||| |||| |
Sbjct 793 TTCACCCAAAAACATACACTAGACCCGGTCATAGAACCGAGCAATCAAGAACCGTCCAAC 852
Query 707 AAAATC-TCGGGTTACAGCCTCAGGCTGTGCAGTCATTACCAAATCACAGAGGTGGCTCT 765
|||||| | |||| ||| ||||| ||| ||||||||||||||||||||| | ||||||||
Sbjct 853 AAAATCCT-GGGTCACAACCTCACGCTATGCAGTCATTACCAAATCACAAAAGTGGCTCT 911
Query 766 AATAATGGTAATCCAAGTCCTCAAGCTGTCCCTTCCAATCCATACGTATGGACTCGAAGA 825
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |
Sbjct 912 AATAATGGTAATCCAAGTCCTCAAGTTGTCCCTTCCAATCCATATGTATTGACTCGACGG 971
Query 826 CCAAGTAAAGGTGTTTATCCTCTGGAAAACAGTGTACAGAACATTTCTCAAGGCTCACAA 885
|||||||| || |||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 972 CCAAGTAATGGCGTTTATCCTCCGGAAAACAGTGTACAGAATATTTCTCAAGGCTTACAA 1031
Query 886 CCTACCCATTATGCTCCTCCCATGGCTTCACAAGGCGCACAACCTACCCT-TTATGCTCC 944
|||||| |||||||||||| |||||||||||||||| |||||||||||| || ||||||
Sbjct 1032 CCTACCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAACCTACCCGCTT-TGCTCC 1090
Query 945 TCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCATCCCGTGGCTTCACAAGG 1004
|||| ||||||||||||||||||| |||||| ||| ||||| |||||| |||||||||||
Sbjct 1091 TCCCGTGGCTTCACAAGGCTCACAGCCTACCTGCTGTGCTCCTCCCGTTGCTTCACAAGG 1150
Query 1005 C 1005
|
Sbjct 1151 C 1151
Score = 523 bits (283), Expect = 1e-147
Identities = 395/447 (88%), Gaps = 16/447 (4%)
Strand=Plus/Plus
Query 870 TTCTCAAGGCTCACAACCTACCC-ATTATGCTCCTCCCATGGCTTCACAAGGCGCACAAC 928
||| ||||||||||||||||||| || |||||||||| |||||||||||||| |||| |
Sbjct 1058 TTCACAAGGCTCACAACCTACCCGCTT-TGCTCCTCCCGTGGCTTCACAAGGCTCACAGC 1116
Query 929 CTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCAT 987
||| ||| | |||||||||| | |||||||||||||| || |||||||| ||||||| |
Sbjct 1117 CTA-CCTGCTGTGCTCCTCCCGTTGCTTCACAAGGCTCGCAGCCTACCCGATATGCTCCT 1175
Query 988 CCCGTGGCTTCACAAGGCAATGCACAGCGGATCGTTACTAGTTATATCTCAACTGTGCCG 1047
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1176 CCCGTGGCTTCACAAGGCAATGCACAGCGGATTGTTACTGGTTCTATCTCAACTGTGCCG 1235
Query 1048 GTATCTCAGAGCAAAGAGTACGCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GTATCTCAGAGCAAAGAG---GCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1292
Query 1108 CAGACGAGTGCAGTTCCGGCTATAACTCCTAATCCTCCGGCGAACCAGCAACAACAACAT 1167
||||||| |||||| || |||| |||||||||||||||||| |||||| ||||||||
Sbjct 1293 CAGACGAATGCAGTCCCAACTATGACTCCTAATCCTCCGGCGGTCCAGCAGCAACAACAA 1352
Query 1168 CAACAATCAGGAAGAAGTAAAGATAAAGTATTGTCCGAGTTTGAAGCCTGGCTCTTGGAC 1227
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1353 CAACAATCAGGAAGAAGTAACGATAGAGTATTGTCCGAGTTTGAAGACTGGCTCTTGGAC 1412
Query 1228 GACTCAACTTTGTCTTGTCCCTTGTCTGGTGAAGACAATACCGCTTCTACATTCAAGATC 1287
|||||||| ||| ||||||||| ||||| | |||||||||| || | | || ||
Sbjct 1413 GACTCAACCTTGCCTTGTCCCTCGTCTGTTCAAGACAATACA--TTG-A-A---AA--TC 1463
Query 1288 GATTTCCAAACCTTCTTGAATGATTGA 1314
|||||| ||||||||||||||||||||
Sbjct 1464 GATTTCGAAACCTTCTTGAATGATTGA 1490
Score = 130 bits (70), Expect = 4e-29
Identities = 87/95 (92%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 912 TTCACAAGGCGCACAACCTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAAC 970
||| |||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 1016 TTCTCAAGGCTTACAACCTA-CCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAAC 1074
Query 971 CTACCCGCTATGCTCATCCCGTGGCTTCACAAGGC 1005
||||||||| ||||| |||||||||||||||||||
Sbjct 1075 CTACCCGCTTTGCTCCTCCCGTGGCTTCACAAGGC 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5