BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328837 Length=2220 Score E Sequences producing significant alignments: (Bits) Value AT4G28600.1 | Symbols: NPGR2 | no pollen germination related 2 ... 3469 0.0 > AT4G28600.1 | Symbols: NPGR2 | no pollen germination related 2 | chr4:14129311-14132799 FORWARD LENGTH=2731 Length=2731 Score = 3469 bits (1878), Expect = 0.0 Identities = 2108/2222 (95%), Gaps = 4/2222 (0%) Strand=Plus/Plus Query 1 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGTGAAA-TAAGAAAAAGTTT 59 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 312 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGT-AAACTAAGAAAAAGTTT 370 Query 60 GAGAAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAGCAAATGAGACTTAGAGAGGATGA 119 ||| |||||||||||||||||||||||||||||||| |||||||| | |||||| || || Sbjct 371 GAGGAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAACAAATGAGGCATAGAGAAGAAGA 430 Query 120 AGACAAGAAATCTGACCTTGGAGTTGGCAGAGACTACAATGGAAGCTCAGCTTTATCCAC 179 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 431 AGACAAGAAATCTGAGGTTGGAGTTGGTAGAGACTACAATGGAAGCTCAGCTTTATCGAC 490 Query 180 CGCAGACAGCGAGAATGCCAAGAAACTAGATAATGGGAATATTGAAGAAGCCGAGTTATC 239 |||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 491 CGCAGAAAGCGAGAATGCTAAGAAACTAGATAATGGAAATATCGAAGAAGCCGAGTTATC 550 Query 240 TCTGCGTGAGACGAGTTCGTTGAACTACGAGGAGGCGAGAGCACTTTTGGGAAGAATTGA 299 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 551 TCTGCGTGAGACGAGTTCATTGAACTACGAGGAGGCGAGAGCGCTTTTGGGAAGAATTGA 610 Query 300 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 611 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 670 Query 360 GATCACAATAAAGATGAAAACCACTCTAACCGTTAGAGAAGAACGGAAACATAGAAGACG 419 |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 671 TATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGAAGACCGGAAACATAGAAGACG 730 Query 420 GTCTAAAGGCGGCTTTGCTGCTACTCCTCCGCCTTCGATGTCTAAACATGCTGTTAGTTT 479 |||||||||||||||| || || ||||| | ||| | ||||||||||||||||||||||| Sbjct 731 GTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCTAAACATGCTGTTAGTTT 790 Query 480 GCTTTTCGAAGCTATTTTTCTCAAAGCAAAATCTCTCCAGCGTCTTGGAAGGTTTCAAGA 539 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 791 ACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTGGAAGGTTCCAAGA 850 Query 540 AGCTGCGCAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 599 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 AGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 910 Query 600 GTCGGATAATGTGACTGGCGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTCGAGCT 659 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 911 GTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTTGAGCT 970 Query 660 GCTTCCTGAATTGTGGAAGCTTGCTGATTCGCCGCGTGATGCTATTTTGTCATATAGAAG 719 ||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 971 GCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAAG 1030 Query 720 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATCCAGAAAGAGTA 779 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1031 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTA 1090 Query 780 TGCCGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCACCAAACCTACGTTCTCAGAC 839 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1091 CGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGAC 1150 Query 840 TGAAGGCTCGTTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTAATGTTACT 899 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1151 TGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACT 1210 Query 900 TCTCAGGAAAGTTAATCTGAAAAGAATCTCGTGGGATGCGGCAATCTTGGACCATCTCTC 959 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1211 TCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC 1270 Query 960 GTTCGCTCTTACAATCGCAGGCGATCTAACTGCTCTGGCTAAGCAATTTGAAGAGCTTAG 1019 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1271 GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAG 1330 Query 1020 TCCCGAGCTCTATG-ATCAGAGGGAACTTTATCATACATTGTCTCTCTGTTATCAAGGTG 1078 ||| ||||||| || ||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 1331 TCCTGAGCTCT-TGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTG 1389 Query 1079 CAGGAGAAGGTCTTGTCGCGCTCGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1138 |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1390 CAGGAGAAGGTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1449 Query 1139 CTAACCGAATTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGATCTGGTCTCG 1198 | ||| | | ||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1450 CAAACAGGACTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTG 1509 Query 1199 CTGAGGAAGGATTAGATTATGCCCGGAGAGCAATCGGGAACTTGGGGAACGAATGCAGTC 1258 |||||||||| |||||||||||||||| ||| ||||| ||||||||||| |||||||||| Sbjct 1510 CTGAGGAAGGGTTAGATTATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTC 1569 Query 1259 AGTTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACACTCACGGAAAGCTCGAGAATGG 1318 | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1570 AATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGG 1629 Query 1319 CTGTTACAGAGACTGAGCGGATAGCTAGGCAATCCGAGGGGATTCAGGCTCTGGAATCTG 1378 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1630 CTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTG 1689 Query 1379 CTGATATGACAAACCCGAGAGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1438 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1690 CAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1749 Query 1439 AACTGGATTCTGCATTAGCATATGCTAAACAGGCGTTGAAACTTGGAGCGGAGTCTGATC 1498 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1750 AACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAGCAGAGTCTGATC 1809 Query 1499 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCGCAGAAGCGGTTTTCAGACGCAG 1558 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1810 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTCAGACGCGG 1869 Query 1559 AGACCATTGTGGATGCGGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1618 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1870 AGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1929 Query 1619 GTTTGAAGGCAAAGATTCGCTTAGCTAAAGGGGAAGTGAAAGATGCGATTACGACTTACA 1678 |||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| Sbjct 1930 GTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA 1989 Query 1679 CACAACTTCTAGCACTCCTTCAGGTTCAGAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 1738 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1990 CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 2049 Query 1739 CTAAGGGATATGTAGAGGAATTGAGGAGTCTGGAGCTTGGTACGTGGCACGATCTGGCTC 1798 |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 2050 CTAAGGGATATGTAAAGGAATTGATGAGTCTGGAGCTTGGGACGTGGCACGATCTGGCTC 2109 Query 1799 ATATCTACATAAACCTCTCTCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 1858 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2110 ATATTTACATAAACCTCTCGCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 2169 Query 1859 TCATTGCGCCTTACTCTTCTGTTAGATACCACACTGAAGGTGTACTGCACAATAGACAGG 1918 ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| || Sbjct 2170 TCATTGCACCTTACTCTTCTGTTAGATACCACATTGAAGGTGTACTGTACAATAGACGGG 2229 Query 1919 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGATATAGATCCGATGCACG 1978 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2230 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGACATAGATCCGATGCACG 2289 Query 1979 TTCCAAGCTTAATATCGAAGGCTGAGATCCTGCTGGAACTCGGGAATCGATCAGGCATAG 2038 | |||||||||| ||||||||||||||| |||||||| |||| || ||||||||||||| Sbjct 2290 TCCCAAGCTTAACATCGAAGGCTGAGATACTGCTGGAGGTCGGTAACCGATCAGGCATAG 2349 Query 2039 CGGTTGTAAGAAGCTTTCTAATGGAAGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2098 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2350 CGGTTGTTAGAAGCTTTCTAATGGAGGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2409 Query 2099 GGTATAATCTTGGAAAGATGTTCAAAGCTGAAGGATCTGTCTCGTCAATGCAAGAAGCCG 2158 |||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 2410 GGTACAATCTTGGAAAGATGTTCAAAGCTGAAGGGTCCGTCTCGTCGATGCAAGAAGCCG 2469 Query 2159 TCGAGTGTTTTCAAGCCGCTGTTACACTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2218 | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 2470 TTGAGTGTTTTCAAGCCGCCGTTACTTTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2529 Query 2219 GA 2220 || Sbjct 2530 GA 2531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110139995730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5