BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328837
Length=2220
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28600.1 | Symbols: NPGR2 | no pollen germination related 2 ... 3469 0.0
> AT4G28600.1 | Symbols: NPGR2 | no pollen germination related
2 | chr4:14129311-14132799 FORWARD LENGTH=2731
Length=2731
Score = 3469 bits (1878), Expect = 0.0
Identities = 2108/2222 (95%), Gaps = 4/2222 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGTGAAA-TAAGAAAAAGTTT 59
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 312 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGT-AAACTAAGAAAAAGTTT 370
Query 60 GAGAAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAGCAAATGAGACTTAGAGAGGATGA 119
||| |||||||||||||||||||||||||||||||| |||||||| | |||||| || ||
Sbjct 371 GAGGAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAACAAATGAGGCATAGAGAAGAAGA 430
Query 120 AGACAAGAAATCTGACCTTGGAGTTGGCAGAGACTACAATGGAAGCTCAGCTTTATCCAC 179
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 431 AGACAAGAAATCTGAGGTTGGAGTTGGTAGAGACTACAATGGAAGCTCAGCTTTATCGAC 490
Query 180 CGCAGACAGCGAGAATGCCAAGAAACTAGATAATGGGAATATTGAAGAAGCCGAGTTATC 239
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 491 CGCAGAAAGCGAGAATGCTAAGAAACTAGATAATGGAAATATCGAAGAAGCCGAGTTATC 550
Query 240 TCTGCGTGAGACGAGTTCGTTGAACTACGAGGAGGCGAGAGCACTTTTGGGAAGAATTGA 299
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 551 TCTGCGTGAGACGAGTTCATTGAACTACGAGGAGGCGAGAGCGCTTTTGGGAAGAATTGA 610
Query 300 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 670
Query 360 GATCACAATAAAGATGAAAACCACTCTAACCGTTAGAGAAGAACGGAAACATAGAAGACG 419
|||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 671 TATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGAAGACCGGAAACATAGAAGACG 730
Query 420 GTCTAAAGGCGGCTTTGCTGCTACTCCTCCGCCTTCGATGTCTAAACATGCTGTTAGTTT 479
|||||||||||||||| || || ||||| | ||| | |||||||||||||||||||||||
Sbjct 731 GTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCTAAACATGCTGTTAGTTT 790
Query 480 GCTTTTCGAAGCTATTTTTCTCAAAGCAAAATCTCTCCAGCGTCTTGGAAGGTTTCAAGA 539
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 791 ACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTGGAAGGTTCCAAGA 850
Query 540 AGCTGCGCAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 910
Query 600 GTCGGATAATGTGACTGGCGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTCGAGCT 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 911 GTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTTGAGCT 970
Query 660 GCTTCCTGAATTGTGGAAGCTTGCTGATTCGCCGCGTGATGCTATTTTGTCATATAGAAG 719
||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 971 GCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAAG 1030
Query 720 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATCCAGAAAGAGTA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1031 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTA 1090
Query 780 TGCCGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCACCAAACCTACGTTCTCAGAC 839
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1091 CGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGAC 1150
Query 840 TGAAGGCTCGTTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTAATGTTACT 899
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1151 TGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACT 1210
Query 900 TCTCAGGAAAGTTAATCTGAAAAGAATCTCGTGGGATGCGGCAATCTTGGACCATCTCTC 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1211 TCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC 1270
Query 960 GTTCGCTCTTACAATCGCAGGCGATCTAACTGCTCTGGCTAAGCAATTTGAAGAGCTTAG 1019
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1271 GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAG 1330
Query 1020 TCCCGAGCTCTATG-ATCAGAGGGAACTTTATCATACATTGTCTCTCTGTTATCAAGGTG 1078
||| ||||||| || ||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1331 TCCTGAGCTCT-TGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTG 1389
Query 1079 CAGGAGAAGGTCTTGTCGCGCTCGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1138
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1390 CAGGAGAAGGTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1449
Query 1139 CTAACCGAATTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGATCTGGTCTCG 1198
| ||| | | ||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1450 CAAACAGGACTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTG 1509
Query 1199 CTGAGGAAGGATTAGATTATGCCCGGAGAGCAATCGGGAACTTGGGGAACGAATGCAGTC 1258
|||||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||||||||
Sbjct 1510 CTGAGGAAGGGTTAGATTATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTC 1569
Query 1259 AGTTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACACTCACGGAAAGCTCGAGAATGG 1318
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1570 AATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGG 1629
Query 1319 CTGTTACAGAGACTGAGCGGATAGCTAGGCAATCCGAGGGGATTCAGGCTCTGGAATCTG 1378
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1630 CTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTG 1689
Query 1379 CTGATATGACAAACCCGAGAGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1438
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 CAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1749
Query 1439 AACTGGATTCTGCATTAGCATATGCTAAACAGGCGTTGAAACTTGGAGCGGAGTCTGATC 1498
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1750 AACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAGCAGAGTCTGATC 1809
Query 1499 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCGCAGAAGCGGTTTTCAGACGCAG 1558
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1810 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTCAGACGCGG 1869
Query 1559 AGACCATTGTGGATGCGGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 AGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1929
Query 1619 GTTTGAAGGCAAAGATTCGCTTAGCTAAAGGGGAAGTGAAAGATGCGATTACGACTTACA 1678
|||||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1930 GTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA 1989
Query 1679 CACAACTTCTAGCACTCCTTCAGGTTCAGAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 1738
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1990 CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 2049
Query 1739 CTAAGGGATATGTAGAGGAATTGAGGAGTCTGGAGCTTGGTACGTGGCACGATCTGGCTC 1798
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2050 CTAAGGGATATGTAAAGGAATTGATGAGTCTGGAGCTTGGGACGTGGCACGATCTGGCTC 2109
Query 1799 ATATCTACATAAACCTCTCTCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 1858
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 ATATTTACATAAACCTCTCGCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 2169
Query 1859 TCATTGCGCCTTACTCTTCTGTTAGATACCACACTGAAGGTGTACTGCACAATAGACAGG 1918
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 2170 TCATTGCACCTTACTCTTCTGTTAGATACCACATTGAAGGTGTACTGTACAATAGACGGG 2229
Query 1919 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGATATAGATCCGATGCACG 1978
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2230 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGACATAGATCCGATGCACG 2289
Query 1979 TTCCAAGCTTAATATCGAAGGCTGAGATCCTGCTGGAACTCGGGAATCGATCAGGCATAG 2038
| |||||||||| ||||||||||||||| |||||||| |||| || |||||||||||||
Sbjct 2290 TCCCAAGCTTAACATCGAAGGCTGAGATACTGCTGGAGGTCGGTAACCGATCAGGCATAG 2349
Query 2039 CGGTTGTAAGAAGCTTTCTAATGGAAGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2098
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2350 CGGTTGTTAGAAGCTTTCTAATGGAGGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2409
Query 2099 GGTATAATCTTGGAAAGATGTTCAAAGCTGAAGGATCTGTCTCGTCAATGCAAGAAGCCG 2158
|||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 2410 GGTACAATCTTGGAAAGATGTTCAAAGCTGAAGGGTCCGTCTCGTCGATGCAAGAAGCCG 2469
Query 2159 TCGAGTGTTTTCAAGCCGCTGTTACACTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2218
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2470 TTGAGTGTTTTCAAGCCGCCGTTACTTTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2529
Query 2219 GA 2220
||
Sbjct 2530 GA 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110139995730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5