BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328861
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28350.1 | Symbols: | Concanavalin A-like lectin protein ki... 2909 0.0
> AT4G28350.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr4:14026577-14028622 FORWARD LENGTH=1950
Length=1950
Score = 2909 bits (1575), Expect = 0.0
Identities = 1832/1953 (94%), Gaps = 30/1953 (2%)
Strand=Plus/Plus
Query 1 ATGTTCTCGAAAGTTTCCATTTTTATCTTTTTCGTCACATCCATACTGTTGTTCCGATCA 60
|||||||| |||||||||||| || |||||| | || ||||| |||| ||||||||||||
Sbjct 1 ATGTTCTCTAAAGTTTCCATTCTTCTCTTTTCCCTCGCATCCCTACTCTTGTTCCGATCA 60
Query 61 ACCACATGCGTCGAATTCATCTACAACTCCAATTTCACCACCACCAACACACTTCTCCTC 120
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACCACAGGCATCGAATTCATCTACAACTCCAATTTCACCACAACCAACACACTTCTCCTC 120
Query 121 GGCAACGCCACCGTTAATTCTCCGCCGTCGATCCTCACCCTCACCAACCAAACCACTTTC 180
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCAACGCCACTGTTAAATCTCCACCGTCGATCCTCACCCTCACCAACCAAACCACTTTC 180
Query 181 TCCATCGGACGTGGCCTCTACCCTTCAAGAATCAACG---CCTCCTCCTCTGCCTCGCCT 237
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TCCATCGGACGTGGCCTCTACCCTTCAAGAATCAACGCCTCCTCCTCCTCTGCCTCGCCG 240
Query 238 TTACCTTTCGCCACATCATTCATCTTCTCCATGGCTCCTTTCAAA-AGCCTCTCTCCTGG 296
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 241 TTACCTTTCGCCACATCATTCATCTTCTCCATGGCTCCTTTTAAACA-CCTCTCTCCTGG 299
Query 297 CCACGGCTTCGCCTTCGTCTTCCTCCCTTTCTCCGAAACCTCCGCCGCTAGCTCATCTCA 356
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 300 CCACGGCTTCGCCTTCGTCTTCCTTCCTTTCTCCGAAACCTCCGCCGCAAGCTCATCTCA 359
Query 357 GCATCTCGGCCTCTTCAACTTCACCAATAACGGCGACCCCAACAGCCGAATCTTCGCCGT 416
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 360 GCATCTCGGCCTCTTCAACTTCACCAATAACGGTGACCCCAATAGCCGAATCTTCGCCGT 419
Query 417 AGAATTTGATGTTTTCCCTAACCAAGAGTTCAACGACATCAACGGCAACCACGTCGGCGT 476
||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 TGAATTCGATGTTTTCGCTAACCAAGAGTTCAACGACATCAACGACAACCACGTCGGCGT 479
Query 477 CGACGTCAATTCCCTCACTTCCGTTGCATCTGAAACTGCAGGTTTCTATGGAGGAAGAGA 536
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CGACGTCAATTCTCTCACTTCCGTTGCATCTGAAACTGCAGGTTTCTATGGAGGCAGAGA 539
Query 537 CGGCGAGAGATTCACGGAGCTGAGGCTTAACAGTGGCGAGAATTACCAGGCGTGGATTGA 596
|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 540 CGGCCAGAGATTCACGGAGCTGAAGCTTAACAGTGGCGAGAATTATCAGGCGTGGATCGA 599
Query 597 GTTTGATGGGTCAGCCATCAATGTCACGATGGCTAGAGCTGGCTCTAGAAAGCCCATAAG 656
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 GTTTAATGGGTCAGCGATCAATGTCACGATGGCTAGAGCTAGCTCTAGAAAGCCCATAAG 659
Query 657 ACCACTCATAAGCATTCCATTGAACCTCACTGGAGTTTTACTTGATGATATGTTCGTTGG 716
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 660 ACCACTCATAAGCATTCCATTAAATCTCACTGGAGTCTTACTTGATGATATGTTCGTTGG 719
Query 717 ATTCACTGCATCCACAGGACAACTAGTACAGAGCCATAGGATTCTCTCAT-G-G----AG 770
||||||||| ||||||||||||||||| |||||||||||||||||||||| | | ||
Sbjct 720 ATTCACTGCCTCCACAGGACAACTAGTGCAGAGCCATAGGATTCTCTCATGGAGTTTTAG 779
Query 771 ---------TTT-T--A---GTGACTCTGTTTTAAAGTCTAAAGGCTTCATTGCTGTGGT 815
||| | | ||||||||||||| |||||||||||||||||||||| |||
Sbjct 780 TAACTCCAATTTCTCCATTGGTGACTCTGTTTTGAAGTCTAAAGGCTTCATTGCTGGGGT 839
Query 816 TTCTAGTGGTGTTGTGTTGCAGGGACTAGCAGGAGACGTGGAAGATTGGGAAACAGAGTA 875
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 840 CTCTAGTGGTGTTGTGTTGCAGAGACTAGAAGGAGACGTGGAAGATTGGGAAACAGAGTA 899
Query 876 TTGGCCTCACAGAGTGCAATACAAAGACGTTTTGGAAGCAACCAAGGGGTTTTCAGAAGT 935
||||||||||||||||||||||||||| |||||||||||||| || |||||||| || |
Sbjct 900 TTGGCCTCACAGAGTGCAATACAAAGATGTTTTGGAAGCAACAAAAGGGTTTTCCGATGA 959
Query 936 GAACATGATCGGATACGGAGGGAATTCTACGGTGTATAGAGGAGTGTTGGAAGGTAAAGA 995
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 960 GAACATGATCGGATACGGAGGGAATTCTAAAGTGTACAGGGGAGTGTTGGAAGGTAAAGA 1019
Query 996 AGTGGCGGTTAAGAGAATAATGATGAGCCCTAGAGAGAGCGTTGGCGCGACGAGTGAATT 1055
||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 1020 AGTTGCGGTTAAGAGAATAATGATGAGTCCTCGAGAGAGCGTTGGCGCGACGAGTGAGTT 1079
Query 1056 CTTGGCCGAGGTCTCGAGCTTAGGGAGGTTAAGGCACAAGAATATAGTTGGACTAAAAGG 1115
||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1080 CTTAGCTGAGGTCTCGAGCTTAGGGAGGTTGAGACACAAGAATATAGTTGGACTAAAAGG 1139
Query 1116 TTGGTCCAAGAAAGGAGGAGAGAGTCTGATATTGATTTACGAATATATGGAGAATGGAAG 1175
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TTGGTCTAAGAAAGGAGGAGAGAGTCTGATATTGATTTACGAGTATATGGAGAATGGAAG 1199
Query 1176 TGTCGATAAGCGGATATTTGATTGCGATGAGATGTTGAATTGGGAGGAAAGAATGAGAGT 1235
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1200 TGTCGATAAGCGGATATTTGATTGTAACGAGATGTTGAATTGGGAGGAAAGAATGAGAGT 1259
Query 1236 GATAAGAGACCTAGCCTCAGGGATGTTGTATCTACACGAAGGGTGGGAGTCAAAGGTGTT 1295
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1260 GATAAGAGACCTAGCCTCAGGGATGTTGTATCTACACGAAGGGTGGGAGACAAAGGTGTT 1319
Query 1296 ACATAGAGATATAAAGTCAAGCAATGTGTTGCTTGACAAGGATATGAACGCGAGGGTAGG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACATAGAGATATAAAGTCAAGCAATGTGTTGCTTGACAAGGATATGAACGCGAGGGTAGG 1379
Query 1356 TGATTTCGGGCTGGCTAAGTTGCAGAACACTAGTAAAGAAATGGTTAGCACGACACACGT 1415
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1380 TGATTTTGGGTTGGCTAAGTTGCAGAACACTAGTAAAGAGATGGTTAGCACGACACATGT 1439
Query 1416 GGTTGGAACAGCGGGTTATATGGCGCCTGAGCTGGTTAAGACAGGGAGAGCATCAGCGCA 1475
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1440 TGTTGGAACAGCGGGTTATATGGCGCCTGAGTTGGTTAAGACAGGGAGAGCATCAGCGCA 1499
Query 1476 GACCGATGTGTATAGCTTTGGAGTGTTTGTGTTGGAGGTAGTGTGTGGAAGGAGGCCAAT 1535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AACCGATGTGTATAGCTTTGGAGTGTTTGTGTTGGAGGTAGTGTGTGGAAGGAGGCCAAT 1559
Query 1536 AGAGGAAGGAAGAGAAGGGATAGTGGAATGGATGTGGGGACTAATGGAGAAAGACAAAGT 1595
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 AGAGGAAGGAAGAGAAGGGATAGTGGAATGGATATGGGGACTAATGGAGAAAGACAAAGT 1619
Query 1596 GGTTGATGGTTTAGACGAGAGAATAAAGGCGAGA-GGAAG-GTTTGAGACCGAGGAAGTA 1653
|||||||||||||||||||||||||||||||| | ||| | ||| | | |||||||||
Sbjct 1620 GGTTGATGGTTTAGACGAGAGAATAAAGGCGA-ATGGA-GTGTTCGTGGTCGAGGAAGTG 1677
Query 1654 GAGATGGCTCTGAGAATAGGACTGTTGTGTGTGCATCCTGATCCGAGGGTGCGTCCAAAT 1713
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1678 GAGATGGCTCTGAGAATAGGACTGTTGTGTGTGCATCCTGATCCGAGAGTGCGTCCGAAG 1737
Query 1714 ATGAGACAGGTGGTGCAGATATTAGAACAAGGGAGATTAGTGGAGGATGGTGGTGAGAGG 1773
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1738 ATGAGACAAGTGGTGCAGATATTGGAACAAGGGAGATTAGTGGAGGATGGTGGTGAAAGG 1797
Query 1774 GAAATGAGCTTGTTGAAGAGAGTGAAGAGCTCTTACTTGTTGGAAACTGGTGAGGGAAGC 1833
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GAAATAAGCTTGTTGGAGAGAGTGAAGAGCTCTTACTTGTTGGAAACTGGTGAGGGAAGC 1857
Query 1834 AGACAACAACATCCCACGTTCCAAGATGTATGGAACTCGTCTTCTTATTCTAATTCCTTC 1893
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1858 AGACAACAACATCCCACGTTCCAAGATGTATGGAATTCGTCTTCTTATTCTAATTCCTTC 1917
Query 1894 GAAAGTTATGATTCTATTCTTCATGGAAGGTGA 1926
||| ||||||||||||||||||||||||||||
Sbjct 1918 CAAACTTATGATTCTATTCTTCATGGAAGGTGA 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5