BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328874
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28210.1 | Symbols: emb1923 | embryo defective 1923 | chr4:1... 1602 0.0
> AT4G28210.1 | Symbols: emb1923 | embryo defective 1923 | chr4:13990617-13992078
FORWARD LENGTH=1211
Length=1211
Score = 1602 bits (867), Expect = 0.0
Identities = 990/1050 (94%), Gaps = 6/1050 (1%)
Strand=Plus/Plus
Query 1 ATGACGctcttagctctctcttcgtctctttcttcttcttcttccttcttctGCCGCAAT 60
|||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 18 ATGACGCTTTTAGCTCTCTCTTCTTCTCTGTCTTC-TC--CTTCCTTCTTCTGCCGCAAT 74
Query 61 TCGAGAATTCCTTTTTCTCCTGTGTCGCGTCTTTCTTGTCTTAATGGTGATAATGAGCTA 120
|| | |||| ||| ||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 75 TCTCGTATTCGTTTCTCTCCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTT 134
Query 121 ACAATTTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGCCTCCGTCGTTTCGGGGCTCCG 180
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 135 ACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCG 194
Query 181 GGGAAGTTTCCGAGTGTGAGACTTAGGGTTTCGACGAGGTGCGAGAAAGAAAATGCACCT 240
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 195 GGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCC 254
Query 241 AACGGTGGGATTGAAGATGAGGCGGAGCGATTTGCGAGGCGAGAGAGCACGATGCCTGAT 300
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 255 AAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGAT 314
Query 301 AGATTCAGATATTTGACCAAAGAAGCTCCGGATAGCCCAATTATCTGGCCTTGGTTTGTT 360
||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 315 AGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTT 374
Query 361 GCGCTCGGGTTTCTCGTTTATGCGTGGAGAGCAGTCTTGTTTGAACTATCCAACTGGAGA 420
||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 375 GCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCAACTGGAGA 434
Query 421 AAGGCGGCTTTCGCTATCCTTGGGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCCCTT 480
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 435 AAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCTCTT 494
Query 481 GTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGTCTTGTAGAGACTGCAATG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 495 GTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGCCTTGTAGAGACTGCAATG 554
Query 541 TACAGTGTCAGGGCGTTCTATTCCGGGATTGTGGCTTATACCCCTGTGAGAGAGTTAATC 600
|||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||| |
Sbjct 555 TACAGTGTTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACC 614
Query 601 ACGGTGATCCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAAACTCA 660
||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 615 ACGGTAATTCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCA 674
Query 661 ATCAGCAAGCAGCCATATGTGGTAACTATTGCGGGTCTCGTGGGGTATGCAGCGGTGCAG 720
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 675 ATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGGTGGGGTATGCAGCGGTGCAG 734
Query 721 AGTTACATCTCAGAGCCATTCTTCTGGACTGTCTTGTTGGGTTTGTATGGGTATTCGCGG 780
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 735 AGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGG 794
Query 781 TTGCTAAAGAAGAGAGACGATGTGACATCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGA 840
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 795 TTGATAAAGAAGAGAGACGATGTGACCTCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGA 854
Query 841 GTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTAT 914
Query 901 CACAATTCAACTAAGA---CCTCAGAGGAAGAGAGTCAGAGCTTAAGGAGGGCACCACCA 957
||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 915 CACAATTCAACGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCA 974
Query 958 ATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAAATGGGCTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 ATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAAATGGGCTGGA 1034
Query 1018 TACAGACACTTGACTTGGATGATTGTTTGA 1047
||||||||||||||||||||||||||||||
Sbjct 1035 TACAGACACTTGACTTGGATGATTGTTTGA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5