BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328881
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28110.1 | Symbols: AtMYB41, MYB41 | myb domain protein 41 |... 1199 0.0
> AT4G28110.1 | Symbols: AtMYB41, MYB41 | myb domain protein 41
| chr4:13968029-13969384 REVERSE LENGTH=986
Length=986
Score = 1199 bits (649), Expect = 0.0
Identities = 795/862 (92%), Gaps = 23/862 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGGTCACCTTGTTGTGATAAAAATGGAGTGAAGAAGGGACCATGGACGGCTGAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGAAGATCACCTTGTTGTGATAAAAATGGAGTGAAGAAGGGACCATGGACTGCTGAG 60
Query 61 GAGGATCAGAAACTCATCGATTATATTCGATTTCATGGTCCTGGCAATTGGCGTATTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAGGATCAGAAACTCATCGATTATATTCGATTTCATGGTCCTGGCAATTGGCGTACGCTC 120
Query 121 CCCAAAAATGCTGGACTCCAAAGATGCGGAAAAAGCTGCCGTCTTCGATGGACCAATTAT 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAAAATGCTGGACTCCATAGATGTGGAAAAAGCTGCCGTCTTCGATGGACCAATTAT 180
Query 181 CTAAGACCGGACATCAAGAGAGGAAGATTCTCCTTCGAGGAAGAAGAAACTATCATTCAG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTAAGACCGGACATCAAGAGAGGAAGATTCTCGTTCGAGGAAGAAGAAACTATCATTCAG 240
Query 241 CTACACAGTGTTATGGGAAACAAGTGGTCTGCCATAGCAACTCGTCTACCAGGAAGGACC 300
||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||
Sbjct 241 CTACACAGTGTTATGGGAAACAAGTGGTCAGCAATAGCCGCTCGTCTACCAGGGAGGACC 300
Query 301 GATAACGAAATCAAAAATCATTGGAACACTCATATCCGCAAGAGACTTATAAGGAGTGGT 360
||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct 301 GATAACGAAATAAAAAACCATTGGAACACTCACATCCGCAAGAGACTTGTAAGGAGTGGT 360
Query 361 ATCGATCCTGTTACTCACTCTCCACGCCTTGATCTTCTTGATTTGTCCTCACTTTT-AGG 419
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 ATCGACCCTGTTACTCATTCTCCACGCCTTGATCTTCTTGATTTGTCCTCACTTTTGAG- 419
Query 420 TGCACTTTTCAATCAGCCAAACTTTTCATCGGCTGCAACACATGCGTCGTCTCTTCTTAA 479
|||||||||||| ||||||||||||||| | | ||||||||||||||| |||||||||||
Sbjct 420 TGCACTTTTCAACCAGCCAAACTTTTCAGCAGTTGCAACACATGCGTCTTCTCTTCTTAA 479
Query 480 TCCTGATGTATTGAGGCTAGCCTCTCTTCT-CTTGCCACAGCTTCAAAACCCTAATCCAA 538
|||||||||||||||| | |||||||| || || ||||| |||||||||||||||||
Sbjct 480 TCCTGATGTATTGAGGTTGGCCTCTCTACTACT-GCCAC---TTCAAAACCCTAATCCAG 535
Query 539 TGTACGCATCGTCAAACCTCGACCAAAATCTTCAAACCCCAA-TCACATCATCAGAAT-G 596
| ||| ||||| || ||||||||||||||||||||| |||| | ||||||||||||| |
Sbjct 536 TTTACCCATCG--AA-CCTCGACCAAAATCTTCAAACTCCAAAT-ACATCATCAGAATCG 591
Query 597 TTCTCAACCACAAGCCGAGAGTACTAC---CCCAACAAACAATGAAACTTCATCTTTCGA 653
| ||||||||||||| |||| || ||| |||||||||| ||||||||||||| || ||
Sbjct 592 T-CTCAACCACAAGCTGAGACTAGTACAGTCCCAACAAACTATGAAACTTCATCATTGGA 650
Query 654 GCTTATGAACGCAAGACTCGACGACGTTG--CTTCCGCAGATGTATTACCACCTTTGTCA 711
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 651 GCCTATGAACGCAAGACTCGACGACGTTGGTCTT--GCAGATGTATTACCACCTTTGTCA 708
Query 712 GAGAGTTTTGACTTAGAATCGCTCATGTCAACGCCAATGTCTTCTCCACAACAAGATAGC 771
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||
Sbjct 709 GAGAGTTTTGACTTAGACTCGCTCATGTCAACGCCAATGTCTTCTCCACGACAAAATAGC 768
Query 772 ATTGAAGCAGGAACCAACTCCAGCAGTTTCTTCGACTTTGGT-TTCCCGGAAGATTTCAT 830
|||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 769 ATTGAAGCAGAAACCAACTCCAGCACTTTCTTCGACTTTGGAATTCC-GGAAGATTTCAT 827
Query 831 CTTAGATGACTTTATGTTTTAA 852
||||||||||||||||||||||
Sbjct 828 CTTAGATGACTTTATGTTTTAA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5