BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328883
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888... 2492 0.0
AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17... 1391 0.0
> AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888-13964229
REVERSE LENGTH=1644
Length=1644
Score = 2492 bits (1349), Expect = 0.0
Identities = 1549/1645 (94%), Gaps = 15/1645 (1%)
Strand=Plus/Plus
Query 6 GTGGTGGCTAAACGGAGGTGTTT-G--GATGATGATGACAACGACCATCATTTATTTTGT 62
||||||| ||||||||||||||| | |||||||||||| ||||||||||||| ||||||
Sbjct 6 GTGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGACCATCATTTCTTTTGT 65
Query 63 TAAAGCTGGAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-ATAT-CTCTA 120
|||||||| ||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 66 TAAAGCTGAAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGC-AAGAT-TGCTCTA 123
Query 121 CG-TACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 -GACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 182
Query 180 CTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGCCCTTTCT 239
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 183 CTCACTCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCCTTTCT 242
Query 240 CTTATCGTGGAATGGAGTGCACATGAGGAAAAATTCGTACCAAGATGGAGTGTATGGGAC 299
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 243 CTTATCTTGGAATGGAGTGCATATGAGGAAAAATTCTTACCAAGATGGAGTGTATGGGAC 302
Query 300 GACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 362
Query 360 CGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGGTTATGGCA 418
|||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 363 CGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGC-GGCCGGTGGTTATGGCA 421
Query 419 GCCTCCGTATCTACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGGAGATT 478
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 422 GCCTCCGTATATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGAAGATT 481
Query 479 TCACCTTCCTCATAGGCGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 538
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCACCTTCCTCGTAAACGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 541
Query 539 ATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGCCAAGGATTAA 598
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 542 ATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAGGGAGTAA 601
Query 599 GTTCTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGATTATCAAATG 658
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 602 GTACTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGAGTATCAAATG 661
Query 659 TAGGGCTTCAAAGCTCCCTCAATTTCGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 718
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 TAGGGCTTCAAACCTCCCTGAATTTAGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 721
Query 719 TCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACATTCATGTTGGTCAAA 778
|||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 722 TCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCATGTTGGTCAAA 781
Query 779 CTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACTCCATAGTCGTTTCCA 838
|||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 782 CTTACTCTTTCTTGGTCACCATGGACCAACCTCCTCAAAACTATTCCATTGTCGTTTCCA 841
Query 839 CAAGATTTATCGGCGCAGACGTTGGGGTGGGATCCACTCTCCACTACTCCAACTCCAAAG 898
||||||||||| |||||| |||| | | || |||||||||||||||||||||||||||
Sbjct 842 CAAGATTTATCAACGCAGAAGTTGTGATCCGAGCCACTCTCCACTACTCCAACTCCAAAG 901
Query 899 GCCATAAGATTATCCCTTCTCGG-GCACCTGATCCAAATGATATAGAATGGTCTATCAAA 957
| |||||||||||| || | || | |||||||||| ||||| |||||||||||||||||
Sbjct 902 GTCATAAGATTATCACTGCGCGACG-ACCTGATCCAGATGATGTAGAATGGTCTATCAAA 960
Query 958 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCCGGGCCAAGGACCGACCCTCAAGGC 1017
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 961 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCGGGGCCAAGGACTAACCCTCAAGGC 1020
Query 1018 TCGTACCATTATGGTAAAATGAAGATTTCTAGGAATTTAATATTGGAAAGCTCAGCGGCT 1077
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1021 TCATACCATTATGGTAAAATGAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCT 1080
Query 1078 CTTGTGAAAAGAAAGCAACGCTATGCCATTAGCGGTGTCTCGTTCGTGCCTCCGGATACT 1137
||||||||||||||||||||||||||||| | || || |||||||||||| ||||||||
Sbjct 1081 CTTGTGAAAAGAAAGCAACGCTATGCCATAAATGGCGTATCGTTCGTGCCTTCGGATACT 1140
Query 1138 CCGCTGAAGCTGGCGGATCATTTTAAGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCT 1197
||||||||||| ||||||||||| || |||||| ||||||||||||| |||| |||||||
Sbjct 1141 CCGCTGAAGCTTGCGGATCATTTCAAAATAAAAGATGTTTTTAAAGTTGGAACCATCCCT 1200
Query 1198 GACAAGCCGAGAAGAGGAGGAGGGATGAGGCTAGACACATCAGTGATGGGAGCACACCAC 1257
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 1201 GACAAGCCGAGAAGAGGAGGAGGAATAAGGCTAGACACAGCAGTGATGGGAGCACACCAC 1260
Query 1258 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTC 1317
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATCGTCCAAAGTTACCACCTC 1320
Query 1318 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACATGCGAGCAGA 1377
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1321 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACGTGCGAGCAGA 1380
Query 1378 CGAGAGTATAACCTCAAGGATGCTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCT 1437
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1381 CGAGAGTATAACCTCAAGGATGCTATATCTCGCTCCACTACTCAAGTATATCCAAAATCT 1440
Query 1438 TGGACAGCTATATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1497
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TGGACAGCTGTATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1500
Query 1498 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCT 1557
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1501 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTCATTCTCCAAATCACTCT 1560
Query 1558 CTCAAAGATGAATACCCTTTGCCCAAA-AATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1616
| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1561 CCCAAAGATGAATACCCTTTGCC-AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1619
Query 1617 AAATATGTCCATCATCACTCCTTAG 1641
||| |||||||||||||||||||||
Sbjct 1620 AAACATGTCCATCATCACTCCTTAG 1644
> AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17985372
FORWARD LENGTH=1915
Length=1915
Score = 1391 bits (753), Expect = 0.0
Identities = 1370/1659 (83%), Gaps = 78/1659 (5%)
Strand=Plus/Plus
Query 7 TGGTGGCTAAACGGAGG-TGTTT-G--GATGATGATGACAACG--A-CCATCATTTATTT 59
||||||||||| || || |||| | ||||||||||| ||| | ||||||||| |||
Sbjct 73 TGGTGGCTAAATGG-GGCCGTTTGGACGATGATGATGATGACGATATCCATCATTTCTTT 131
Query 60 TGTTAAAGCTGGA-GA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-AT 113
|||| ||||| || || |||| |||||| | ||||||| |||||||||||| || ||
Sbjct 132 TGTTCAAGCT-GATGATCCCTACCGTTTTTT-CGACTGGAGAGTCACTTACGGC-AACAT 188
Query 114 ATCTCTACGT-ACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGG 172
|||| || | | || |||| |||||||||||| ||||||||||||| ||| ||||| |
Sbjct 189 TTCTCCACTTGGCATT-CCTCAAAGGGGAATCCTGATAAACGGACAATATCCAGGACCCG 247
Query 173 AGATTCGCTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGC 232
| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 248 ATATTTACTCAGTCACCAATGACAATTTGATCATCAATGTTCACAACGATCTCGACGAGC 307
Query 233 CCTTTCTCTTATCGTGGAATGGAGTGCA-CATGAGGAAAAATTCGTACCAAGATGGAGTG 291
||||||||||||| ||||| |||||||| | ||||||| ||||| |||||||||||||||
Sbjct 308 CCTTTCTCTTATCTTGGAACGGAGTGCAAC-TGAGGAAGAATTCTTACCAAGATGGAGTG 366
Query 292 TATGGGACGACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAA 351
|||||||||||||||||||||||||| || || || |||||||||| | | |||||||||
Sbjct 367 TATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTACACTTATGCCATCCAAGTCAAA 426
Query 352 GATCAGGTCGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGG 410
|| ||| ||||||||| ||| || |||||||||||||| || || ||| ||| |||||||
Sbjct 427 GACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGCCGTTCACAAAGCTG-CCGGTGG 485
Query 411 TTATGGCAGCCTCCGTATC-TACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 469
|| |||| | |||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 486 TTTTGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 544
Query 470 CAGGAGATTTCACCTTCCTCATAGGCGATTGGTATC-GACGTAACCATACGACTTTGAAG 528
| |||||||||||||||||||| || ||||||| | | | | |||| | | |||||||
Sbjct 545 CTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTAAG-CATGACCACAAGGTTTTGAAG 603
Query 529 AAAATTTTGGATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGC 588
|||||||||| |||||| |||| |||| ||||| | |||||| |||||||||||
Sbjct 604 GCAATTTTGGATAGAGGACACAAGCTACCTT---TGCCTCAAGGGGTTTTGATCAATGGC 660
Query 589 CAAGGATTAAGTT-C-TGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCA 646
|||||| | |||| | ||| | | | ||||||||| ||||||||||||| |||||||| |
Sbjct 661 CAAGGAGTCAGTTACATGTCT-TCC-ATCACCGTCCACAAAGGTAAAACATACAGATTTA 718
Query 647 G-ATTATCAAATGTAGGGCTTCAA-AGCTCCCTCAATTTC-GAAATATTAGGTCATCAGC 703
| || ||| ||||||||||||||| | | | || |||||| ||| | ||||||||||
Sbjct 719 GGAT-ATCGAATGTAGGGCTTCAACA-CACTCTGAATTTCAGAA-TCCAAGGTCATCAGA 775
Query 704 TTAAGCTCATTGAGGTCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACA 763
| |||||| ||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||
Sbjct 776 TGAAGCTCGTTGAGGTAGAGGGAACACACACAGTCCAGTCCATGTATACCTCTCTCGACA 835
Query 764 TTCATGTTGGTCAAACTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACT 823
|||| ||||| || ||||||| |||||||||||||||||||| ||| |||| |||| |
Sbjct 836 TTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCTGACCAAGACTA-T 894
Query 824 C-CATAGTCGTTTCCACAAGATTTATCGGCGCAGA-CG-TTGGGGTGGGATCCACTCTCC 880
||| ||||| ||||||| |||| ||| | | | | |||| | ||| ||| |||
Sbjct 895 GACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTC--ATCTACTATCC 952
Query 881 ACTACTCCAACTCCAAAGGCCATAAG--ATT-ATCC-CTTCTCGGGCA--CC-TGATCCA 933
||||||||||||| || | | ||| | | | ||| || || || || || || |
Sbjct 953 ACTACTCCAACTC-AA-GAC-ATA-GCCACTCATCTTCTGCTAATTCAGTCCATGTTCAA 1008
Query 934 -AA--TG---AT-A--TAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTA 984
|| || || | |||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1009 CAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGGACCAATCTA 1068
Query 985 ACTGCGTCCGGGCCAAGGACCGA-CCCTCAAGGCTCGTACCATTATGGTAAAATGAAGAT 1043
|| ||||| ||||||||| || | |||||| || |||||||| |||||| ||| |||||
Sbjct 1069 ACCGCGTCTGGGCCAAGG-CCTAACCCTCAGGGTTCGTACCACTATGGTCGAATCAAGAT 1127
Query 1044 TTCTAGGAATTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGC 1103
|||||||| ||| |||||||||||||||||||| || ||||| || ||||||||||| ||
Sbjct 1128 TTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAACGCTACGC 1187
Query 1104 CATTAGCGGTGTCTCGTTCGTGCCTCCG-GATACTCCGCTGAAGCTGGCGGATCATTTTA 1162
||| | ||| || ||||| || ||| | ||||||||||| ||||| |||||| | || |
Sbjct 1188 CATAAACGGAGTGTCGTTTGTACCTG-GAGATACTCCGCTAAAGCTTGCGGATTACTTCA 1246
Query 1163 AGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCTGACAAGCCGAGAAGAGGAGGAGGGA 1222
|||| ||| ||||| ||| | |||||||| ||||||||||||||||||||| ||||||
Sbjct 1247 AGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGAAGAGGGA 1306
Query 1223 TGAGGCTAGACACATCAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTT 1280
|||| | || || |||||||||||||||||||| | | | ||| ||||| ||||| ||
Sbjct 1307 TGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATT 1364
Query 1281 TCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGT 1340
|||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||
Sbjct 1365 TCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGGGTTGT 1424
Query 1341 TGGGATCA-ATAAAGGAATATGGTCACATGCGAGCAGACGAGAGTATAACCTCAAGGATG 1399
||||| | ||| ||||| ||||||| | || ||||||||||||||||| || | |||||
Sbjct 1425 TGGGA-CGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGGGATG 1483
Query 1400 CTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCTTGGACAGCTATATATGTGGCAT 1459
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1484 CTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTGGCAC 1543
Query 1460 TGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGT-TCTGGGCGAGACAATACTTAGGT 1518
||||||||||||||||||||||||||||||| | | | |||||||| |||||||| |||
Sbjct 1544 TGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATAT-TGGGCGAGGCAATACTTGGGT 1602
Query 1519 CAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCTCTCAAAGATGAATACCCTTTG 1578
|||||||||||||||||||||||||||||| |||||||| | ||||||||| | ||||
Sbjct 1603 CAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTTTTG 1662
Query 1579 CCCAAAAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAA 1617
|| || ||||||||||||||||| || |||||||| |||
Sbjct 1663 CCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAA 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5