BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg328883 Length=1641 Score E Sequences producing significant alignments: (Bits) Value AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888... 2492 0.0 AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17... 1391 0.0 > AT4G28090.1 | Symbols: sks10 | SKU5 similar 10 | chr4:13961888-13964229 REVERSE LENGTH=1644 Length=1644 Score = 2492 bits (1349), Expect = 0.0 Identities = 1549/1645 (94%), Gaps = 15/1645 (1%) Strand=Plus/Plus Query 6 GTGGTGGCTAAACGGAGGTGTTT-G--GATGATGATGACAACGACCATCATTTATTTTGT 62 ||||||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||| Sbjct 6 GTGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGACCATCATTTCTTTTGT 65 Query 63 TAAAGCTGGAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-ATAT-CTCTA 120 |||||||| ||||||||||||||||||||||||||||||||||||| || || | ||||| Sbjct 66 TAAAGCTGAAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGC-AAGAT-TGCTCTA 123 Query 121 CG-TACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 179 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 -GACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCG 182 Query 180 CTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGCCCTTTCT 239 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 183 CTCACTCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCCTTTCT 242 Query 240 CTTATCGTGGAATGGAGTGCACATGAGGAAAAATTCGTACCAAGATGGAGTGTATGGGAC 299 |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 243 CTTATCTTGGAATGGAGTGCATATGAGGAAAAATTCTTACCAAGATGGAGTGTATGGGAC 302 Query 300 GACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 359 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGT 362 Query 360 CGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGGTTATGGCA 418 |||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct 363 CGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGC-GGCCGGTGGTTATGGCA 421 Query 419 GCCTCCGTATCTACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGGAGATT 478 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 422 GCCTCCGTATATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGAAGATT 481 Query 479 TCACCTTCCTCATAGGCGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 538 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 TCACCTTCCTCGTAAACGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGG 541 Query 539 ATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGCCAAGGATTAA 598 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 542 ATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAGGGAGTAA 601 Query 599 GTTCTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGATTATCAAATG 658 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 602 GTACTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGAGTATCAAATG 661 Query 659 TAGGGCTTCAAAGCTCCCTCAATTTCGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 718 |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 662 TAGGGCTTCAAACCTCCCTGAATTTAGAAATATTAGGTCATCAGCTTAAGCTCATTGAGG 721 Query 719 TCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACATTCATGTTGGTCAAA 778 |||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||| Sbjct 722 TCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCATGTTGGTCAAA 781 Query 779 CTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACTCCATAGTCGTTTCCA 838 |||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 782 CTTACTCTTTCTTGGTCACCATGGACCAACCTCCTCAAAACTATTCCATTGTCGTTTCCA 841 Query 839 CAAGATTTATCGGCGCAGACGTTGGGGTGGGATCCACTCTCCACTACTCCAACTCCAAAG 898 ||||||||||| |||||| |||| | | || ||||||||||||||||||||||||||| Sbjct 842 CAAGATTTATCAACGCAGAAGTTGTGATCCGAGCCACTCTCCACTACTCCAACTCCAAAG 901 Query 899 GCCATAAGATTATCCCTTCTCGG-GCACCTGATCCAAATGATATAGAATGGTCTATCAAA 957 | |||||||||||| || | || | |||||||||| ||||| ||||||||||||||||| Sbjct 902 GTCATAAGATTATCACTGCGCGACG-ACCTGATCCAGATGATGTAGAATGGTCTATCAAA 960 Query 958 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCCGGGCCAAGGACCGACCCTCAAGGC 1017 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 961 CAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCGGGGCCAAGGACTAACCCTCAAGGC 1020 Query 1018 TCGTACCATTATGGTAAAATGAAGATTTCTAGGAATTTAATATTGGAAAGCTCAGCGGCT 1077 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1021 TCATACCATTATGGTAAAATGAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCT 1080 Query 1078 CTTGTGAAAAGAAAGCAACGCTATGCCATTAGCGGTGTCTCGTTCGTGCCTCCGGATACT 1137 ||||||||||||||||||||||||||||| | || || |||||||||||| |||||||| Sbjct 1081 CTTGTGAAAAGAAAGCAACGCTATGCCATAAATGGCGTATCGTTCGTGCCTTCGGATACT 1140 Query 1138 CCGCTGAAGCTGGCGGATCATTTTAAGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCT 1197 ||||||||||| ||||||||||| || |||||| ||||||||||||| |||| ||||||| Sbjct 1141 CCGCTGAAGCTTGCGGATCATTTCAAAATAAAAGATGTTTTTAAAGTTGGAACCATCCCT 1200 Query 1198 GACAAGCCGAGAAGAGGAGGAGGGATGAGGCTAGACACATCAGTGATGGGAGCACACCAC 1257 ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 1201 GACAAGCCGAGAAGAGGAGGAGGAATAAGGCTAGACACAGCAGTGATGGGAGCACACCAC 1260 Query 1258 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTC 1317 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1261 AATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATCGTCCAAAGTTACCACCTC 1320 Query 1318 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACATGCGAGCAGA 1377 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1321 GATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACGTGCGAGCAGA 1380 Query 1378 CGAGAGTATAACCTCAAGGATGCTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCT 1437 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1381 CGAGAGTATAACCTCAAGGATGCTATATCTCGCTCCACTACTCAAGTATATCCAAAATCT 1440 Query 1438 TGGACAGCTATATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1497 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 TGGACAGCTGTATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTC 1500 Query 1498 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCT 1557 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1501 TGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTCATTCTCCAAATCACTCT 1560 Query 1558 CTCAAAGATGAATACCCTTTGCCCAAA-AATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1616 | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1561 CCCAAAGATGAATACCCTTTGCC-AAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAA 1619 Query 1617 AAATATGTCCATCATCACTCCTTAG 1641 ||| ||||||||||||||||||||| Sbjct 1620 AAACATGTCCATCATCACTCCTTAG 1644 > AT4G38420.1 | Symbols: sks9 | SKU5 similar 9 | chr4:17982774-17985372 FORWARD LENGTH=1915 Length=1915 Score = 1391 bits (753), Expect = 0.0 Identities = 1370/1659 (83%), Gaps = 78/1659 (5%) Strand=Plus/Plus Query 7 TGGTGGCTAAACGGAGG-TGTTT-G--GATGATGATGACAACG--A-CCATCATTTATTT 59 ||||||||||| || || |||| | ||||||||||| ||| | ||||||||| ||| Sbjct 73 TGGTGGCTAAATGG-GGCCGTTTGGACGATGATGATGATGACGATATCCATCATTTCTTT 131 Query 60 TGTTAAAGCTGGA-GA----TACCCTTTTTTACAACTGGAGGGTCACTTACGGCGAA-AT 113 |||| ||||| || || |||| |||||| | ||||||| |||||||||||| || || Sbjct 132 TGTTCAAGCT-GATGATCCCTACCGTTTTTT-CGACTGGAGAGTCACTTACGGC-AACAT 188 Query 114 ATCTCTACGT-ACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGG 172 |||| || | | || |||| |||||||||||| ||||||||||||| ||| ||||| | Sbjct 189 TTCTCCACTTGGCATT-CCTCAAAGGGGAATCCTGATAAACGGACAATATCCAGGACCCG 247 Query 173 AGATTCGCTCACTCACCAATGACAATTTGGTCATCAATGTTCACAACGATCTCGACGAGC 232 | ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 248 ATATTTACTCAGTCACCAATGACAATTTGATCATCAATGTTCACAACGATCTCGACGAGC 307 Query 233 CCTTTCTCTTATCGTGGAATGGAGTGCA-CATGAGGAAAAATTCGTACCAAGATGGAGTG 291 ||||||||||||| ||||| |||||||| | ||||||| ||||| ||||||||||||||| Sbjct 308 CCTTTCTCTTATCTTGGAACGGAGTGCAAC-TGAGGAAGAATTCTTACCAAGATGGAGTG 366 Query 292 TATGGGACGACTTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAA 351 |||||||||||||||||||||||||| || || || |||||||||| | | ||||||||| Sbjct 367 TATGGGACGACTTGTCCAATCCCACCGGGTAAAAACTACACTTATGCCATCCAAGTCAAA 426 Query 352 GATCAGGTCGGTAGTTACTTTTACTTCCCTTCCCTCGCAGTCCAAAAA-CTGGCCGGTGG 410 || ||| ||||||||| ||| || |||||||||||||| || || ||| ||| ||||||| Sbjct 427 GACCAGATCGGTAGTTTCTTCTATTTCCCTTCCCTCGCCGTTCACAAAGCTG-CCGGTGG 485 Query 411 TTATGGCAGCCTCCGTATC-TACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 469 || |||| | |||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 486 TTTTGGCGGTTTCCGTATCCT-CAGCCGCCCTCGCATCCCCGTCCCTTTCCCTGAACCCG 544 Query 470 CAGGAGATTTCACCTTCCTCATAGGCGATTGGTATC-GACGTAACCATACGACTTTGAAG 528 | |||||||||||||||||||| || ||||||| | | | | |||| | | ||||||| Sbjct 545 CTGGAGATTTCACCTTCCTCATTGGTGATTGGTTTAAG-CATGACCACAAGGTTTTGAAG 603 Query 529 AAAATTTTGGATGGAGGACGCAAGTTACCGACGATGCCTGATGGGGTTATGATCAATGGC 588 |||||||||| |||||| |||| |||| ||||| | |||||| ||||||||||| Sbjct 604 GCAATTTTGGATAGAGGACACAAGCTACCTT---TGCCTCAAGGGGTTTTGATCAATGGC 660 Query 589 CAAGGATTAAGTT-C-TGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCA 646 |||||| | |||| | ||| | | | ||||||||| ||||||||||||| |||||||| | Sbjct 661 CAAGGAGTCAGTTACATGTCT-TCC-ATCACCGTCCACAAAGGTAAAACATACAGATTTA 718 Query 647 G-ATTATCAAATGTAGGGCTTCAA-AGCTCCCTCAATTTC-GAAATATTAGGTCATCAGC 703 | || ||| ||||||||||||||| | | | || |||||| ||| | |||||||||| Sbjct 719 GGAT-ATCGAATGTAGGGCTTCAACA-CACTCTGAATTTCAGAA-TCCAAGGTCATCAGA 775 Query 704 TTAAGCTCATTGAGGTCGAGGGAACCCACACGGTCCAATCCATGTACACCTCCCTCGACA 763 | |||||| ||||||| |||||||| ||||| ||||| |||||||| ||||| ||||||| Sbjct 776 TGAAGCTCGTTGAGGTAGAGGGAACACACACAGTCCAGTCCATGTATACCTCTCTCGACA 835 Query 764 TTCATGTTGGTCAAACTTACTCTGTCTTGGTCACCATGGACCAACCTCCCCAAAACTACT 823 |||| ||||| || ||||||| |||||||||||||||||||| ||| |||| |||| | Sbjct 836 TTCACGTTGGACAGTCTTACTCGGTCTTGGTCACCATGGACCAGCCTGACCAAGACTA-T 894 Query 824 C-CATAGTCGTTTCCACAAGATTTATCGGCGCAGA-CG-TTGGGGTGGGATCCACTCTCC 880 ||| ||||| ||||||| |||| ||| | | | | |||| | ||| ||| ||| Sbjct 895 GACATTGTCGTCTCCACAAAATTTGTCGCCAAAAAACTCTTGGTCTC--ATCTACTATCC 952 Query 881 ACTACTCCAACTCCAAAGGCCATAAG--ATT-ATCC-CTTCTCGGGCA--CC-TGATCCA 933 ||||||||||||| || | | ||| | | | ||| || || || || || || | Sbjct 953 ACTACTCCAACTC-AA-GAC-ATA-GCCACTCATCTTCTGCTAATTCAGTCCATGTTCAA 1008 Query 934 -AA--TG---AT-A--TAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTA 984 || || || | |||| ||||||||||||||||||| ||||||||||||||| ||| Sbjct 1009 CAACCTGCCGATGAACTAGATTGGTCTATCAAACAAGCCCGGTCCATTAGGACCAATCTA 1068 Query 985 ACTGCGTCCGGGCCAAGGACCGA-CCCTCAAGGCTCGTACCATTATGGTAAAATGAAGAT 1043 || ||||| ||||||||| || | |||||| || |||||||| |||||| ||| ||||| Sbjct 1069 ACCGCGTCTGGGCCAAGG-CCTAACCCTCAGGGTTCGTACCACTATGGTCGAATCAAGAT 1127 Query 1044 TTCTAGGAATTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGC 1103 |||||||| ||| |||||||||||||||||||| || ||||| || ||||||||||| || Sbjct 1128 TTCTAGGACTTTGATATTGGAAAGCTCAGCGGCACTAGTGAAGAGGAAGCAACGCTACGC 1187 Query 1104 CATTAGCGGTGTCTCGTTCGTGCCTCCG-GATACTCCGCTGAAGCTGGCGGATCATTTTA 1162 ||| | ||| || ||||| || ||| | ||||||||||| ||||| |||||| | || | Sbjct 1188 CATAAACGGAGTGTCGTTTGTACCTG-GAGATACTCCGCTAAAGCTTGCGGATTACTTCA 1246 Query 1163 AGATAAAAAATGTTTTTAAAGTCGGAAGCATCCCTGACAAGCCGAGAAGAGGAGGAGGGA 1222 |||| ||| ||||| ||| | |||||||| ||||||||||||||||||||| |||||| Sbjct 1247 AGATCAAAGGCGTTTTCAAAATGGGAAGCATACCTGACAAGCCGAGAAGAGGAAGAGGGA 1306 Query 1223 TGAGGCTAGACACATCAGTGATGGGAGCACACCACA-ATG-CTTTTCTTGAGATCATCTT 1280 |||| | || || |||||||||||||||||||| | | | ||| ||||| ||||| || Sbjct 1307 TGAGAATGGAGACGTCAGTGATGGGAGCACACCATAGA-GACTTC-CTTGAAATCATATT 1364 Query 1281 TCAAAACCGCGAGAAGATAGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGT 1340 |||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||| Sbjct 1365 TCAAAACCGCGAGAAGATCGTCCAAAGCTACCACCTCGATGGATATAGTTTTTGGGTTGT 1424 Query 1341 TGGGATCA-ATAAAGGAATATGGTCACATGCGAGCAGACGAGAGTATAACCTCAAGGATG 1399 ||||| | ||| ||||| ||||||| | || ||||||||||||||||| || | ||||| Sbjct 1425 TGGGA-CGGATAGAGGAACATGGTCAAAAGCAAGCAGACGAGAGTATAATCTTAGGGATG 1483 Query 1400 CTATTTCTCGCTCCACTACTCAAGTATATCCAGAATCTTGGACAGCTATATATGTGGCAT 1459 |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1484 CTATTTCTCGCTCCACCACTCAGGTATATCCAGAATCTTGGACAGCCGTATATGTGGCAC 1543 Query 1460 TGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGT-TCTGGGCGAGACAATACTTAGGT 1518 ||||||||||||||||||||||||||||||| | | | |||||||| |||||||| ||| Sbjct 1544 TGGACAATGTGGGGATGTGGAATCTAAGGAGTGAATAT-TGGGCGAGGCAATACTTGGGT 1602 Query 1519 CAACAATTCTACCTTCGAGTTTATTCTCCAGTTCACTCTCTCAAAGATGAATACCCTTTG 1578 |||||||||||||||||||||||||||||| |||||||| | ||||||||| | |||| Sbjct 1603 CAACAATTCTACCTTCGAGTTTATTCTCCAACACACTCTCTTAGAGATGAATATCTTTTG 1662 Query 1579 CCCAAAAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAA 1617 || || ||||||||||||||||| || |||||||| ||| Sbjct 1663 CCTAAGAATGCTTTGTTGTGTGGCCGAGCCTCCAATAAA 1701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81073880175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5