BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328884
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28088.1 | Symbols: | Low temperature and salt responsive p... 366 4e-101
> AT4G28088.1 | Symbols: | Low temperature and salt responsive
protein family | chr4:13961244-13961560 REVERSE LENGTH=234
Length=234
Score = 366 bits (198), Expect = 4e-101
Identities = 223/235 (95%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATGGGTGCGAGATTTGCTGTGAAATAATGATCGCCATTCTCATCCCTCCTCTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGAATGGGTGCGAGATTTGCTGTGAAATAATGATCGCCATACTCATCCCTCCTCTA 60
Query 61 GGGGTTTGTCTGAGGCATGGCTGTTGCACTACGGAGTTCATGATATGTTTGATCCTAACG 120
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 61 GGGGTTTGTCTGAGGCATGGCTGTTGCACTACGGAATTCATGATATGTCTGATCCTAACG 120
Query 121 CTTCTGGGG-TACGTACCGGGGATCATCTATGCACTTTATGCAATCGTGTACGTGGATCG 179
|| || ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 CT-CTTGGGATACGTACCGGGGATCATCTACGCACTCTATGCAATCGTGTACGTGGATCG 179
Query 180 TGATCAATTCTTCGATGAGTACCGTCGTCCACTTTTTTATGCCCAATCACCCTGA 234
||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 180 TGATCAATTTTTCGATGAGTACCGTCGTCCACTTTTCTATGCCCAGTCACCGTGA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5