BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328905
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27870.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 1838 0.0
> AT4G27870.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr4:13878923-13882882 FORWARD LENGTH=2549
Length=2549
Score = 1838 bits (995), Expect = 0.0
Identities = 1114/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 1166 CAGCCGCTGTTCAGCGTGATGCAGCCACTTCGATTCCAGTTGCAAAATCAAACGATACAA 1225
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1178 CAGCCGTTGTTCAGCCTGATGCAGCCACTTCGATTCAAGTTGCAAAATCAAACGATACAA 1237
Query 1226 GC-AAAGTTGTCAACAATGGAG-TGATTGTTGAAGACGGGCAAAAGTTTCTGGCTCCTAC 1283
|| ||| |||| |||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1238 GCGAAA-TTGTAAACAATGGAGCT-ATTGTTGGAGACGGGCAAAAGTTTCTGGCTCCTAT 1295
Query 1284 GACGGAGGAGCAAACACAGCAAAAGATTGACAATGATGATTCTAGTACAGCAGACGGGAA 1343
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GGTGGAGGAGCAAACACAGCAAAAGATTGACAATGATGATTCTAGTACAGCAGACGGGAA 1355
Query 1344 GCACACGTCAGACAAAGGACGTCTCTCCCCAATTCAACCATCTCATGGCATGAGTATATT 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1356 TCACACGTCAGACAAAGGACGTCTCTCCCCAATTCAACCATCTCATGGCATGAGTATACT 1415
Query 1404 AAACACAGTGACTAACGGACCCGACGGATTTAGAGTAGAAACTACATTTCATGAAGAAGG 1463
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1416 AAACACAGTGACTAACGGACCCGACGGATTGAAAGTAGAAACTACAATTCATGAAGAAGG 1475
Query 1464 TGCCCCTCTTCTGTTTGAAGGAAAAGACACTTCTGACACAAGAAAGCCAGATTTTGGTCT 1523
||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 1476 TGCCCCTCTTCTGTTTGAAGGAAAAGACACTCCTGACACAAGCACGGCAGATTTTGGTCT 1535
Query 1524 GACCAAAGTAACAGGTGTGATGGACACAGGTGACAGAGGAGTTATCACCAGTCCAGCAAA 1583
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1536 GACCAAAGTAACAGGTGTGATGGACACAGGTGACAGAGGAGTTATTACCGGTCCAGCAAA 1595
Query 1584 TCCTGAAATTGATATTTCACCAGGGAATTTGCTGGAAGAAGGGTCTCTAAGGGAACCGTT 1643
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 TCCTGAAATTGATATTTCAGCAGGGAATTTGCTGGAAGAAGGGTCTCTAAGGGAACCGTT 1655
Query 1644 AATGAGACGAGTTGTTGTTCAAGGACGTAAACTGGAAATCTTGAAAAGCATTGTCTACGG 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 AATGAGACGAGTTGTTGTTCAAGGACGTAAACTGGAAATCTTGAAAAGCATTGTCTACGG 1715
Query 1704 AGGTCTACTAGAAGCCATCACAAGCCTTGGTGTTATTTCATCCGCCGCTGGTTCTGGTGC 1763
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1716 AGGTCTACTAGAAGCCATCACAAGCCTTGGTGTTATTTCATCTGCCGCTGGTTCTGGTGC 1775
Query 1764 TTCAATGTTGAATATTCTGGTCTTGGGACTTGCAAATTTGATTGGCGGGCTTATTCTCAT 1823
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||
Sbjct 1776 TTCAATGTTGAATATTCTGGTCTTGGGGCTTGCAAACTTGCTTGGCGGGCTTATTCTTAT 1835
Query 1824 TATTCATAATCTCCAAGAACTTAGAGAGGAGGAACCCATTAGAACAACAACAGAGGATAA 1883
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1836 TATTCATAATCTCCAAGAACTTAGAGAGGAGGAACCCATAAGAACAACAACAGAAGATAA 1895
Query 1884 CCAGACTAACAGTCGAGAAGAAGAAGAAGGTCGGTATAAGCGACTCCTTGG-CAGAAGAG 1942
|||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1896 CCAGACTAACGGTAGAGAAGAAGAAGAAGGTCGGTATAAGCGACTCCTTGGAC-GAAGAG 1954
Query 1943 AAAATTTCACGCTTCACGCAACAGTCGCAATCTTATCCTTCATAATCGTCGGAATACTCC 2002
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1955 AAAATTTCACACTTCACGCAACAGTCGCAATCTTATCCTTCATAATCACCGGAATACTCC 2014
Query 2003 CTCCTGTAGTCTACTATTTCTCATTCAGCGAAAAACACAACAAAGACTACAAAGTGGCAT 2062
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 2015 CTCCTGTAGTCTACTATTTCTCATTCAGTGAAAAACACAACAAAGACTACAAAGTTGCTT 2074
Query 2063 CAGTTTTCGGGGCATCTCTATTCTGCATAGTCTTGCTCGCCATAGCCAAAGCTCACGTGA 2122
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2075 CAGTTTTCGGGGCATCTCTATTCTGCATCGTCTTGCTCGCCATAGCCAAAGCTCATGTGA 2134
Query 2123 ATTACCCGAGAGGCAGCTACCTGAAGAGCATTTTGTACTATGCGACAATCGCTGTATCGG 2182
|||||||||||||||||||||||||||||| ||||||| | | |||| ||||||||||
Sbjct 2135 GGTACCCGAGAGGCAGCTACCTGAAGAGCATTCTGTACTACGGGTCAATTGCTGTATCGG 2194
Query 2183 TGTCGGGGATTTCTTACGTGGTTGGTAACTTTCTGGAACATTTGCTTGGGAAGTATGGAT 2242
|||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 2195 TGTCGGGGATTTCTTATGTGGTTGGTAACTTTCTGGAACAGTTGCTTGAGAAGCATGGAT 2254
Query 2243 GGTCTGATGGATCAGAAACTCCGGTGGGACAGATGATGCTTTCATCACTTATGGGAAGAA 2302
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2255 GGTCTGATGGATCGGAAACACCTGTGGGACAGATGATGCTTTCATCACTTATGGGAAGAA 2314
Query 2303 AAGCCGGCTTAGGATACTCATCATCGTACTGA 2334
|||||||||| |||||||||||||||||||||
Sbjct 2315 AAGCCGGCTTTGGATACTCATCATCGTACTGA 2346
Score = 616 bits (333), Expect = 4e-175
Identities = 467/527 (89%), Gaps = 28/527 (5%)
Strand=Plus/Plus
Query 410 AAGGTTCTGAGACAGCTGGTGGAGA-ACATGATGCTCAT---GAGTCTCAAACTGCTGAC 465
||||||||||| |||||||| | | || |||||||||| ||||||||||||||||||
Sbjct 416 AAGGTTCTGAGTCAGCTGGT-GCCATACCTGATGCTCATGAGGAGTCTCAAACTGCTGAC 474
Query 466 TTGAATGGGGAGGAAAAGCAGTTAGAACCTGAAAACGATTCAACTTCTGAGGATAACAAA 525
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 475 TTGAATGGGGAGCAAACGCAGTTAGAACCTGAAAACGGTTCAACTTCTGAGGATAACGAA 534
Query 526 AGTTCTCGTGAAATCGAAGAAGTAC-AGGATGGTGATGTCTCTAAAGACCGT-GATGCTG 583
|| ||||||||||| |||||||||| | |||||||||||||||||||| | | |||||||
Sbjct 535 AGATCTCGTGAAATTGAAGAAGTACTA-GATGGTGATGTCTCTAAAGA-CTTGGATGCTG 592
Query 584 TTGATCAACCT-GCTGGTGATGTGATAGAGGAGGAGGTGGACATCGAAGATGTTGAAGAT 642
|||||| | || |||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 593 TTGATCCA-CTCGCTGGTGAGGTGATAGAGGAGGAGGTGGACTTCGAAGATGTTGAATAT 651
Query 643 TATGATGTGGAGAATGTGCTGGATAAGCAAGAGACACATGATCTGTTCTGTCCAAACTGC 702
|||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 652 CATGATGTGGAGAATATGATGGATAAGCAAGAGACACATGATTTGTACTGTCCAAACTGC 711
Query 703 GATTCTTGCATCACCAAAAGAG-TTGTCCTCAAAAGAAGAAAACGGAA-AGTCCG-C--C 757
||||||||||||||||||| || || ||||||||||||| |||||||| | |||| | |
Sbjct 712 GATTCTTGCATCACCAAAA-AGGTTATCCTCAAAAGAAGGAAACGGAAGA-TCCGTCGTC 769
Query 758 ATGAGCTGGGAGATTCAAAGCGCGTGAGAGGGCCTCATTGGACTGAGCCTCTTCTTCATT 817
|||||||||||||||||||||| | ||||||| ||||||||||||| ||||||
Sbjct 770 ATGAGCTGGGAGATTCAAAGCG-G--------CCTCATTTGACTGAGCCTCTTTTTCATT 820
Query 818 CGGAAGACAATTTGCCATCTCTAGGTGTTGGTGAAAACTCTGCAGATGAATCATTTCTGT 877
|||||||||||||||||||||||| || ||||||||||||||| |||| |||||| | |
Sbjct 821 CGGAAGACAATTTGCCATCTCTAGATGGCGGTGAAAACTCTGCAAATGAGTCATTTGTCT 880
Query 878 TCAAGTGCTTGTCATGCTTTACCATATTTATTCCCAAAGGTGTCGAG 924
|||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 881 TCAAGTGCTTGTCATGCTTTACCATATTTATTCCCAAAGGGGT-GAG 926
Score = 375 bits (203), Expect = 8e-103
Identities = 315/366 (86%), Gaps = 20/366 (5%)
Strand=Plus/Plus
Query 1 ATGGGATCCGCCGCCGAACTCACGGAGCCCACCACCGGGACCGAGAAGCACCACCAGCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ATGGGATCCGCCGCCGAACTCACGGAGCCCACCACCGGGACCGAGAAGCTTCACCAGCCA 120
Query 61 ATAGAAGTGGAAGAAGAAGACGAGCAAATTGTCGACTTGGAGAGGAAAACATTTCGTCAT 120
|||||||| |||||||| ||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 121 ATAGAAGTTGAAGAAGATGACGAACAAATTGTTGATTTGGAGAGGAAAACATTCCGTCAT 180
Query 121 GGAAAGAGACACGATACTAGTTTAGACAGTAGTACAATCACCAGTACCACCAACACCAGC 180
|||||| |||||||||||||| | ||||||||||||||||||| || |||| | | |
Sbjct 181 GGAAAGGGACACGATACTAGTGTGGACAGTAGTACAATCACCA--AC-ACCAGCTC--G- 234
Query 181 TCGGCGTCTTCTAGCTTTTCCGGTGATGTT--A-CGGTAGAGACTCCCGATTTCCACAGC 237
||| |||||||||||||||||||||||| | | ||| |||||| |||||||||||||||
Sbjct 235 TCGTCGTCTTCTAGCTTTTCCGGTGATGGTGGAACGGAAGAGACCCCCGATTTCCACAGC 294
Query 238 AACGCCCAAGGAGAACATACCGCACT-AGTTAATTTGGAG--C-------TAGAAACTGA 287
|||| | | ||||||||||||| | | ||| ||||||||| | ||||||||||
Sbjct 295 AACGGCGATGGAGAACATACCG-ATTTAGTAAATTTGGAGGTCCCGGAGCTAGAAACTGA 353
Query 288 AGTTGGATTTCACGAAGAGCATAACGGCGGGAACAATTGCATCGTCTTCTTCGACGAAGA 347
| | | ||||||| |||||||| ||| |||||| |||||||||||||||||||||| |||
Sbjct 354 AATCGTATTTCACCAAGAGCATGACGACGGGAAGAATTGCATCGTCTTCTTCGACGGAGA 413
Query 348 ACAAGG 353
||||||
Sbjct 414 ACAAGG 419
Score = 298 bits (161), Expect = 2e-79
Identities = 207/229 (90%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 914 AAGGTGTCGAGGGGTTAAAGATTCAGCCAAACCCTCAAGAGGAAGCTACAGGCGATTCCA 973
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 950 AAGGAGTTGAGGGGTTAAAGATTCAGCCAAACCCTCAAGTGGAAGCTACAGGCGATTCCA 1009
Query 974 ATTGGTTCAATTCAATATTCGGCTTTAACAAAAAAGAATCAGCTGTTCAGCAAGGTGGGG 1033
||||||||| ||||||||| ||| | |||||||| ||||||||| |||||||||||||||
Sbjct 1010 ATTGGTTCAGTTCAATATTTGGCCTCAACAAAAAGGAATCAGCTATTCAGCAAGGTGGGG 1069
Query 1034 CATCATCTAGTGTCCCGGAAGCTAATCCGCCTC---GTGAATCTAGTGTCCCAGTAGTTA 1090
|||||||||||||| ||||||||||||||| | |||| || | ||||||||||||||
Sbjct 1070 CATCATCTAGTGTCTTGGAAGCTAATCCGCCACCACGTGAGTCCATTGTCCCAGTAGTTA 1129
Query 1091 ATCCGCCGCGTGGTAACCTAAGTCCTTTGGGAAAGGATACGACAGGCTC 1139
|||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1130 ATCCATCGCGTGGTAACCTAAGTCCTATGCGAAAGGATACGACAGGCTC 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5