BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328915
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27750.1 | Symbols: ISI1 | binding | chr4:13841688-13843633 ... 1099 0.0
> AT4G27750.1 | Symbols: ISI1 | binding | chr4:13841688-13843633
FORWARD LENGTH=1070
Length=1070
Score = 1099 bits (595), Expect = 0.0
Identities = 663/696 (95%), Gaps = 3/696 (0%)
Strand=Plus/Plus
Query 1 ATGTATCTGAAGAGACCGATATGGAGCGATGGCGCGTCAGCAGCAACGCCGGAGAATCCG 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 21 ATGTATCTGAAGAGACCGATATGGAGCGATGGCGCGT---CAGCAACGCCGGAGAATCCA 77
Query 61 TCGGAATCGGAGAACGGAGAGGATTCAGACGCGGCGGCGATGGTAGTTGAAGAGCTGGTG 120
|| |||||||||| |||||| || |||||||||||| |||||||||| ||||||||||||
Sbjct 78 TCAGAATCGGAGACCGGAGAAGAATCAGACGCGGCGTCGATGGTAGTCGAAGAGCTGGTG 137
Query 121 ACTTCTCTCAATACACAGAGACTTTATAGGGAGCTGACACTATCCCTCAGGACCGGCTTA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 138 ACTTCTCTCAATACACAGAGACTTTACAGGGAGCTGACACTATCCCTCAGGACCGGTTTA 197
Query 181 CGCGATGCTTGCGCTGAGTTCTCCTTCCTTCGCATCCGTGGCCTTAGATCTCTTCTCAAA 240
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 198 CGCGATGCTTGCGCTGAATTCTCCTTCCTTCGCATCCGTGGTCTTAGATCTCTTCTCAAA 257
Query 241 ACTCTCCGAACTGTCGCCGATTCAGATTCCATCATCCGCCTCTTCTCTCATACCCAAACC 300
||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 258 ACTCTCCGAACTGTCGCTGATTCAGATTCAATCATTCGTCTCTTCTCTCATACCCAAACC 317
Query 301 ATTTCCGATCTCCAATTGGTTCCGGTGCTTTTTCGACATTCGTTGAAAGAAGCGGAGGAT 360
||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 318 ATTTCCGATCTCCAACTGGTTCCGGTGCTTTTTCAACATTCATTGAAAGAAGCGGAGGAT 377
Query 361 GATAGAGTGACGAGCTTGGATCATATATTCAGTGTGGAGCCGATGAAGATAACGAGTCCT 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 378 GATAAAGTGACGAGCTTGGATCATATATTCAGTGTGGAGCCGATGAAGATAACAAGTCCT 437
Query 421 TCTACGGATGCTGAGGTCGCGGTTGCACTTAGGGTTCTCGAAGGATGCTGTCTTCTCCAT 480
||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 438 TCTACGGATGCTGAGGTTGCTGTTGCTCTTAGAGTTCTCGAAGGATGCTGCCTTCTCCAT 497
Query 481 CCTCAGAGCACTGTTCTGGCTCATAAGCACGGTGCAGTCCGCGTAATGATGAATGTATTA 540
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 498 CCTCAGAGCACTGTCCTGGCTCATAAGCATGGTGCAGTCCGCGTAATGATGAATGTATTA 557
Query 541 TCAACACGAGGAGTACTTGAGCAAGGGGCCTGCTTGGATGCCTTAATCTCAGTATTGTTG 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 558 TCAACACGAGGAGTACTTGAGCAAGGAGCCTGCTTGGATGCCTTAATCTCAGTATTGCTG 617
Query 601 GATTCATCAGCAAATCAGGTGGATTTTGGAGCCTGCAATGGCATTGAAGAGGTTGCAATG 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 618 GATTCATCAGCAAATCAGGTGGATTTTGGAGCTTGCAATGGCATTGAAGAGGTTGCAATG 677
Query 661 CTCATGCGAGACAAACAAGCTGATGAAAACCTCAGG 696
||||||||||||||||||||||||||||||||||||
Sbjct 678 CTCATGCGAGACAAACAAGCTGATGAAAACCTCAGG 713
Score = 372 bits (201), Expect = 4e-102
Identities = 217/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 743 GGTTAAGATGCGGAGAGTTCTTACTACTGTTAGTTGGACATGTGAATGGGAAGGATCGTT 802
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 712 GGTTAAGATGCGGAGAGTTCTTACTACTGTTAGTTGGACACGTAAATGGGAAGGATCGAT 771
Query 803 CTCCCATAGCAAGTGTAAATGAAGACATCAGGCGCCTCTTGGGTGAAAAATCTGCTTCTT 862
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTCCAATAGCGAGTGTAAATGAAGACATCAGGCGCCTCTTGGGTGAAAAATCTGCTTCTT 831
Query 863 TAATATGGGCGGCGAGTCAATTCGGTTCAACAGGTGATCCTGAACAAAGAATCACTGCTC 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 832 TAATATGGGCGGCGAGTCAATTCGGTTCAACAGGTGATCCTGAACAAAGAATCACGGCGC 891
Query 923 TTCATATCCAGGCTGGTAGAGTTCTCGAGTCTCTTGACTTGTACT 967
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 892 TTCATATCCAGGCTGGTAGAGTGCTCGAGTCTCTTGACTTGTACT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5