BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328916

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27745.1 | Symbols:  | Yippee family putative zinc-binding p...   603    6e-172
  AT4G27740.1 | Symbols:  | Yippee family putative zinc-binding p...   128    4e-29 


> AT4G27745.1 | Symbols:  | Yippee family putative zinc-binding 
protein | chr4:13840015-13841489 FORWARD LENGTH=801
Length=801

 Score =  603 bits (326),  Expect = 6e-172
 Identities = 356/371 (96%), Gaps = 0/371 (0%)
 Strand=Plus/Plus

Query  77   GTGAGGACTTGGTTGGAGCAATTGATCACGCCCTGAAAGTGTTTGATAAAATGGCTCACT  136
            ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  
Sbjct  221  GTGAGAACTTGGTTGGAGCAATTGATCACGCCTTGAAAGTGTTTGATAAAATGGCTCAGG  280

Query  137  CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  CAATTGGTCCAAGACTGTATAGTTGCTGCAACTGCAGAAACCATGTTGGACTTCACGATG  340

Query  197  ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTTTTGTTCTCCCACGCAA  256
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  341  ATATCATCTCTAAGGCTTTTCAGGGAAGAACTGGGCGAGCCTTCCTGTTCTCCCACGCAA  400

Query  257  TGAATATTGTGGTAGGGCCTAAAGAAGACCGGCATCTTCTAACAGGTCTACACACTGTGG  316
            |||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct  401  TGAACATTGTGGTAGGACCTAAAGAAGACCGGAATCTTCTAACTGGTCTACACACCGTGG  460

Query  317  CGGATATATCTTGTGCTGACTGTAATGAACCGTTGGGTTGGAAATACGAGCGAGCTTATG  376
            | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  461  CTGATATATCTTGTGTTGACTGTAACGAACCATTGGGTTGGAAATACGAGCGAGCTTATG  520

Query  377  AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  521  AGACCTCACAGAAGTACAAGGAGGGCAAGTTCATATTCGAAAAGGCTAAGATTGTCAAGG  580

Query  437  AGGATTGGTAG  447
            |||||||||||
Sbjct  581  AGGATTGGTAG  591


> AT4G27740.1 | Symbols:  | Yippee family putative zinc-binding 
protein | chr4:13839075-13839763 FORWARD LENGTH=538
Length=538

 Score =  128 bits (69),  Expect = 4e-29
 Identities = 75/78 (96%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  1    ATGAACGTGGTGGTTGGACCGAAGATTGGGAGGAAACTGATAACCGGCTCGTACGTGGTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct  203  ATGAACGTGGTGGTTGGACCGAAGATTGGGAGGAAACTGATAACCGGATCGTATGTAGTG  262

Query  61   GCAGATGTGATGTGCAGT  78
            ||||||||||||||||||
Sbjct  263  GCAGATGTGATGTGCAGT  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5