BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328945
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27500.1 | Symbols: PPI1 | proton pump interactor 1 | chr4:1... 2806 0.0
> AT4G27500.1 | Symbols: PPI1 | proton pump interactor 1 | chr4:13743110-13746211
FORWARD LENGTH=2337
Length=2337
Score = 2806 bits (1519), Expect = 0.0
Identities = 1759/1868 (94%), Gaps = 43/1868 (2%)
Strand=Plus/Plus
Query 1 ATGGGCGTTGAAGTTGTAAAGTCTGGTGGATTTGAGGTTGCTCCGGCTCCTTTCGAGGGG 60
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATGGGTGTTGAAGTTGTAAACTCTGGTGGATTTGAGGTTGCTCCGGCTCCTTTCGAGGGG 247
Query 61 AAACCT--G-AGAA---GAA-C-GG----AGGAAAAGGAGATAAAGTCTCTATCAAGTTT 108
|||||| | |||| ||| | || ||||||||||||| | | | | ||||| |||
Sbjct 248 AAACCTGAGAAGAACGGGAAGCTGGACCAAGGAAAAGGAGATGATGCCCCCATCAATTTT 307
Query 109 GGTTCACACGGTGAGCCACCAAAGAAAGCCGAAGAGACT-ATCAACAAAGTGTTGAACTC 167
|||||| |||||||| ||||||||| |||||||||| | || ||||||||| | |||||
Sbjct 308 GGTTCAGTCGGTGAGCTACCAAAGAATGCCGAAGAGAATAAT-AACAAAGTGGTCAACTC 366
Query 168 TGATGCACCAAAAAATGCTGCAGAAGAGTGGCCTGCGGCCAAGCAGATCCACTCTTTCTA 227
||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 367 TGATGCACCCAAAAATGCAGCAGAAGAGTGGCCTGTGGCTAAGCAGATCCACTCTTTCTA 426
Query 228 CTTTGTTAAATACCGTTCTTACGCTGACCCGAAAATGAAAGCTAAGCTTGACCTAGCTGA 287
| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 427 CCTTGTTAAATACCGTTCTTACGCTGACCCCAAAATTAAAGCTAAGCTTGATCTAGCTGA 486
Query 288 TAAAGAGCTTGAAAAGTTGAACAAAGCTCGGAGTGGAGTTTTGGACAAGTTGAGAGCTAA 347
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 487 TAAAGAGCTTGAAAAGTTGAACAAAGCTCGGACTGGAGTTTTGGACAAGTTGAGAGCTAA 546
Query 348 GAGGGCCGAGAGATCAGAGTTATTTGATCTTTTGGACCCGTTGAAGTCAGAGCGTAAGGG 407
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 547 GAGGGCCGAGAGATCAGAGTTATTTGATCTGCTGGACCCGTTGAAGTCAGAGCGTAAGGG 606
Query 408 ATTCAACACAATGTTTGATGAGAAAAGAAAGGAAATGGAGCCATTGCAGCAAGCACTGGG 467
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 607 ATTCAACACAATGTTTGATGAGAAAAGAAAGGAAATGGAACCATTGCAGCAAGCACTGGG 666
Query 468 AAAGCTAAGGAGCAATGATGGTGGGAGTGCTCGTGGCCCTGCTATCTGTTCGTCCGAGGA 527
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 667 AAAGTTAAGGAGCAATGATGGTGGGAGTGCTCGTGGCCCTGCTATCTGTTCCTCCGAGGA 726
Query 528 AGAGCTCAATAGTATGATATACAGCTATCAATATCGGATTCAACATGAAAGCATTCCGTT 587
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 727 AGAGCTGAATAGTATGATATACAGCTATCAGTATCGGATTCAACATGAAAGCATTCCGTT 786
Query 588 AACCGAGGAGAAGCAGATTCTCAAAGAGATCAGGCTGCTTGAAGGTACAAGAGATAAGGT 647
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 AACCGAGGAGAAGCAGATTCTCAAAGAGATCAGGCTGCTTGAAGGGACAAGAGATAAGGT 846
Query 648 CATTGCTAATGCGGCAATGAGAGCCAAAATCAAAGAATCTATGGGTCAGAAGGATGATAT 707
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CATTGCTAATGCCGCTATGAGAGCCAAAATCAAAGAATCTATGGGTCAGAAGGATGATAT 906
Query 708 CCAAGGTCAAGTTAAGTTAATGGGTGCTGGTTTGGATGGAGTGAAAAAAGAGAGACAAGC 767
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 907 CCAAGGTCAAGTTAAGTTAATGGGTGCTGGTTTGGATGGAGTGAAAAAGGAGAGGCAAGC 966
Query 768 AATTTCAGCAAGGATTAATGAGCTGAGTGAGAAGTTGAAAGCTACGAAAGATGAGATTCA 827
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 967 AATTTCAGCAAGGATTAATGAGCTGAGTGAGAAGTTGAAAGCTACCAAAGATGAGATT-A 1025
Query 828 -GGTACTGGAGAATGAGCTCAAGACTGTGAGCGAAAAGAGAGACAAAGCCTATTCAAACA 886
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CGGTACTGGAAAATGAGCTCAAGACTGTGAGCGAAAAGAGAGACAAAGCCTATTCAAACA 1085
Query 887 TTCATGACCTCAGGAAGCAACGCGATGAGACGAATTCCGAGTATTACCAAAACCGTACTA 946
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TTCATGACCTCAGGAGGCAACGCGATGAGACGAATTCCGAGTATTACCAAAACCGTACTG 1145
Query 947 TGTTGAACAAAGCTAGAGACTTGGCTGCACAAAAGAACATAAGCGAGCTTGAGGCACTCT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1146 TGTTGAACAAAGCTAGAGACTTGGCTGCACAAAAGAACATAAGCGAGCTTGAGGCGCTAG 1205
Query 1007 CCACTGCCGAGGTTGAGAAATTTATTTCCCTTTGGTGCAGTAAGAAGAATTTCAGAGAAG 1066
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1206 CCAATGCTGAGGTTGAGAAATTTATATCCCTTTGGTGCAGTAAGAAGAATTTCAGAGAAG 1265
Query 1067 ATTATGAGAAGAGAATCTTGCAATCACTTGATAGTAGGCAGCTGAGCCGAGATGGACGGA 1126
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1266 ATTATGAGAAGAGAATCTTGCAATCACTTGATTCTAGGCAGCTGAGCCGAGATGGACGGA 1325
Query 1127 TGAGGAACCCGGAAGAGAAGCCTCTGATTGCTCCAGAGGCACCACCATCAAAGGCAACGC 1186
|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1326 TGAGGAACCCCGATGAGAAGCCTCTGATTGCTCCAGAGGCAGCACCATCAAAGGCAACGC 1385
Query 1187 CTTCTGAAACCGAGGCTGTCCCTAAAGCTAAGGCAAAGCCGCAACCAAAGGAGGAACCAG 1246
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1386 CTTCTGAAACCGAGGTTGTCCCTAAAGCTAAGGCAAAGCCGCAGCCAAAGGAGGAACCAG 1445
Query 1247 TCTCTGCACCTAAACCAGATGCTACTGTTGCTCAGAATACTGAGAAAGCTAAAGATGCAG 1306
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TTTCTGCACCTAAACCAGATGCTACTGTTGCTCAGAATACTGAGAAAGCTAAAGATGCAG 1505
Query 1307 TAAAAGTAAAGAATGTTGCGAATGAAGATGATGATGATGAAGTATATGGTCTTGGAAAGC 1366
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1506 TAAAAGTAAAGAATGTTGC---TGATGATGATGATGATGAAGTATATGGTCTTGGAAAGC 1562
Query 1367 CGCAGAAGGAAGAAAAACCGGTTGATGCAGCTACGGCAAAGGAAATGAGAAAGCAAGAGG 1426
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1563 CGCAGAAGGAAGAAAAGCCGGTTGATGCAGCTACGGCGAAGGAAATGAGAAAGCAAGAGG 1622
Query 1427 AGATTGCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCGGagaaagctgctg 1486
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1623 AGATTGCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCAGAGAAAGCTGCTG 1682
Query 1487 ctaaagctgctataagagctcaaaaggaagctgagaagaaagaaaagaaggaaaTTACCT 1546
|||||||||||||||||||||||||||||||||||||||||| || || | | |
Sbjct 1683 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAGAAGAAAG--AA-AA-G--A--A--- 1731
Query 1547 TTTCtttttttGTTGAGCAAGAGAAGAAAGCCAAGAAGAAGACCGGAGGCAACACAGAAA 1606
| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1732 -----------G--GAGCAAGAGAAGAAGGCCAAGAAGAAAACCGGAGGCAACACAGAAA 1778
Query 1607 CCGAGGCTGAGGAAGTTCCAGAAGCTTCTGAGGAGGAGATTGAAGCTCCGGTGCAGGAGG 1666
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CCGAGACTGAGGAAGTTCCAGAAGCTTCTGAGGAGGAGATTGAAGCTCCGGTGCAGGAGG 1838
Query 1667 AGAAACCGCAGAAGGAAAAAGTCTTCAAGGAGAAACCAATAAGGAACAGGACCCGCGGTA 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AGAAACCGCAGAAGGAAAAAGTCTTCAAGGAGAAACCAATAAGGAACAGGACCCGCGGTA 1898
Query 1727 GAGGACCAGAAACTCTCCCAAGAGTGATCCTTAAGCGTAAGAAGTCGACTAATTACTGGG 1786
| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1899 GGGGACCAGAAACGATCCCAAGAGCGATCCTTAAGCGTAAGAAGTCGACTAATTACTGGG 1958
Query 1787 TTTATGCTGCTCCAGCGGCTTTGGTGGTACTGTTGCTTCTTGTCTTGGGTTACTACTACG 1846
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1959 TTTATGCTGCTCCAGCGGCTCTGGTGGTACTGTTGCTTCTTGTCTTGGGTTACTACTACG 2018
Query 1847 TTCTCTAG 1854
||||||||
Sbjct 2019 TTCTCTAG 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5