BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328949
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27460.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 1648 0.0
> AT4G27460.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr4:13732910-13734304 FORWARD LENGTH=1246
Length=1246
Score = 1648 bits (892), Expect = 0.0
Identities = 1092/1188 (92%), Gaps = 15/1188 (1%)
Strand=Plus/Plus
Query 1 ATGGCACTGTCTCTTCTCTCCTACGATGtctccgacctctgtctcggcaagcctccactc 60
||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 30 ATGGCACTGTCCCTTCTCTCCTACAACGTCTCCGACCTCTGTCTCGGCAAACCTCCTCTT 89
Query 61 cgttctctctccgcctcttcctcctccgTATCAGACGCCATCACTGCCCTGAAATCCTCT 120
|||| ||| ||| ||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 90 CGTTGTCTTTCCTCCTCTTCCTCCTCCGTATCCGACGCCATCGCTGCCCTCAAATCCTCT 149
Query 121 GAAGACACTTTCCTCTCTGTCTGGAACTGCAATCACAACGATGACGTTATCACAGAATGC 180
||||||||||||||||| |||||||| ||||||||| |||||||| || |||||| |||
Sbjct 150 GAAGACACTTTCCTCTCCGTCTGGAATTGCAATCACGACGATGACAATAACACAGAGTGC 209
Query 181 GAGTGCTTGGGGAAAATATCAATGGCTGACATCATCTGCCACTTGTCCAAAGACCACGAC 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 210 GAGTGCTTGGGGAAAATATCAATGGCTGACGTCATCTGCCACTTGTCCAAAGACCATGAC 269
Query 241 CACACTCTCTCTGCCTTAAACGCATCCGTCTCTGTTCTTCTCCCCAAAACTCGTTCCATT 300
|||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 270 CACAGTCTCTGTGCCTTAAACTCATCCGTCTCTGTTCTTCTCCCCAAAACTCGTTCCATT 329
Query 301 GTCCTCCATGTTCAACCCTCGTGCAGCTTAATCGAAGCCATTGATCTGATAATCCAAGGA 360
||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||
Sbjct 330 GTCCTCCATGTTCAACCATCCTGCAGCTTAATAGAAGCCATTGATCTGATAATCAAAGGA 389
Query 361 GCACAGAATTTGATTGTCCCAATACAGACAAAGCCCTTCACTAAGAAAAGGCAGCATAAG 420
||||||||| |||||||||| ||||| |||||||||| ||||||||||| |||||| ||
Sbjct 390 GCACAGAATCTGATTGTCCCGATACATACAAAGCCCTACACTAAGAAAAAGCAGCACAAC 449
Query 421 GACAACGTGTCGGTCACCACCACCACCCACTCGAACGGACGACGATTCTGCTGGATCACA 480
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 450 GACAACGTTTCGGTCACCACCACCACCCACTCGAACGGACAACGATTCTGCTGGATCACA 509
Query 481 CAAGAAGACATCATTCAGTTTCTCCTCGGATCCATCGCCGCATTCTCTCCTTTGCCGGCC 540
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 510 CAAGAAGACATCATTCAGTTTCTCCTCGGATTCATCGCCGCATTCTCTCCTTTGCCAGCG 569
Query 541 ATGTCACTCTCTGACCTCGGTATCATCAACAGCACACACAC-GATCCTTGCGGTCGATTA 599
||||| |||||||| |||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 570 ATGTCCCTCTCTGATCTCGGTGTCATCAACAGCACACACACAGTTG-TTGCGGTCGATTA 628
Query 600 CCACTCCTCCGCCTCCGCAGTTGTCTCCGCCATATCCAACGCTCTCGCCGTCCAAACTTC 659
||||||||| || |||||||||||||| ||| ||||||||||||| ||||||||||| ||
Sbjct 629 CCACTCCTCAGCGTCCGCAGTTGTCTCTGCCGTATCCAACGCTCTTGCCGTCCAAACCTC 688
Query 660 TGTCGCAGTGGTCGACGGTGAGGGAGATGATGACCCTTTTACGTATTTGATCGGTGAAAT 719
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 689 TGTCGCAGTGGTCGACGGTGAGGGAGATGA---CCCTTTTACGTCTTTGATCGGCGAAAT 745
Query 720 ATCCCCAATGACACTAACTTGCTGCGACGAGACAGCAGCTGCGGCGGTGGCGATGCTCTC 779
|||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 746 ATCCCCGATGACATTAACTTGCTGCGACGAGACAGCAGCTGCGGCGGTGGCGACGCTCTC 805
Query 780 TGCAGGAGAACTGGTGGCGTACATAGACGGAGCAAATCCGCCGGAGAGTTTTGTTCAGAA 839
|| ||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 806 CGCTGGAGATCTGATGGCGTACATAGACGGAGCAAATCCTCCGGAGAGTCTTGTTCAGAT 865
Query 840 CGTCAGGAACCGTTTGGAGGACAAAGGATTGATGGGTTTGCTCTCGCTTTTCGATTCTCT 899
||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||
Sbjct 866 CGTTAGGAACCGTTTGGAGGATAAAGGATTGATTGGTTTGATGTCGCTTTTCGATTCTCT 925
Query 900 CTCACCTTATTCGACGTCGTCGGGTTATTCCTCGGAGGAAGAAGCTCCAGCGAGGACGAC 959
|||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 926 CTCATCTTATTCGACGTCGTCGGGTTATTCGTCGGAGGAAGAAGCTCCAGTGAGAACGAC 985
Query 960 GTCGACGTATGGGA-GGTCGATGAGCAGCTCAGCAAGAGTGGCGAGGAAGTCGGAGGCCA 1018
|||| ||||| | |||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 986 GTCG---TATGG-ACGGTCGATGAGTAGCTCAGCAAGAATGGCAAGGAAGTCGGAGGCGA 1041
Query 1019 TAGTGTGTAACCCGAAGAGCTCGTTAATGGCGGTGATGATCCAAGCGGTTGCTCATCGAG 1078
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1042 TAGTGTGTAATCCAAAGAGCTCGTTAATGGCAGTGATGATCCAAGCGGTTGCTCATCGAG 1101
Query 1079 TGAACTACGCGTGGGTGGTTGA-AACGGACGGTTGTTTCGTTGGCATGGTTACTTTTGTT 1137
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1102 TGAACTACGCGTGGGTGGTTGAGAA-GGATGGTTGTTTCGTTGGCATGGTTACTTTTGTT 1160
Query 1138 GATATCTTAAAAGTTTTTAGGAATTTTTTGGAGAATAATGACATGTGA 1185
||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1161 GATATCTTAAAAGTTTTTAGGAAATTTTTGGAGAAT---GACATGTGA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5