BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328954
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27420.1 | Symbols: | ABC-2 type transporter family protein... 3055 0.0
> AT4G27420.1 | Symbols: | ABC-2 type transporter family protein
| chr4:13712199-13714797 REVERSE LENGTH=2152
Length=2152
Score = 3055 bits (1654), Expect = 0.0
Identities = 1835/1923 (95%), Gaps = 9/1923 (0%)
Strand=Plus/Plus
Query 1 ATGGATAGTCAAGAGGTTTCTATGGATGTTGAAGCCCCGATCGAGAAGACCAACGATGAT 60
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 ATGGATAATCAAGAGGTTTCTATGGATGTTGAAACCCCGATCGCGAAGACCAACGATGAT 60
Query 61 CGATCCCTTCCTTTTTCAATTTTTAAAAAGGCTAATACTCCTGTTACCTTAAAGCAGTTT 120
||||| ||||||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 61 CGATCTCTTCCTTTTTCAATTTTCAAAAAGGCTAATAATCCTGTTACCTT-AA--AGTTT 117
Query 121 GAGAACCTTGTGTACACGGTGAAGCTGAAGGAACCACAAGGCTGGTTCCGAAAGAATGAC 180
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 118 GAGAACCTTGTGTACACGGTGAAGCTGAAGGATTCACAAGGCTGTTTCGGAAAGAATGAC 177
Query 181 AAAACCGAGGAGCGAACCATCTTGAAGGGCTTAACAGGGATCGTCAAACCTGGG-GAGAT 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 178 AAAACCGAGGAGCGAACCATCTTGAAGGGCTTAACAGGGATCGTCAAACC-GGGAGAGAT 236
Query 240 CCTGGCTATGCTCGGTCCCTCCGGGAGCGGTAAGACCAGCTTGTTGACGGCTCTCGGAGG 299
| |||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 237 CTTGGCTATGCTTGGTCCCTCCGGGAGCGGCAAGACCAGCTTGTTGACGGCTTTAGGAGG 296
Query 300 ACGGGTAGGGGAAGGGAAAGGGAAGCTCACTGGGAACATATCTTACAACAACAAGCCATT 359
|||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 297 ACGGGTTGGGGAAGGTAAAGGAAAGCTCACAGGGAACATATCTTACAATAACAAGCCATT 356
Query 360 ATCCAAAGCTGTGAAGCGAAGGACCGGTTTCGTGACTCAAGATGATGCTCTTTACCCTAA 419
||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 357 ATCCAAAGCTGTGAAACGAACTACGGGTTTCGTGACTCAAGATGATGCTCTTTACCCTAA 416
Query 420 CTTGACTGTTACAGAAACTCTAGTCTTCACCGCGCTTCTTCGGCTTCCTAATTCTTTTAA 479
|||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 417 CTTGACTGTTACGGAAACTCTAGTATTCACTGCGCTTCTTAGGCTTCCTAATTCTTTTAA 476
Query 480 ACAACAAGAGAAGATCAAACAAGCTAAGGTAGTCATGACTGAATTGGGTCTAGACAGATG 539
| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 477 AAAACAAGAGAAGATCAAACAAGCTAAGGCAGTCATGACTGAACTGGGTCTAGACAGATG 536
Query 540 TAAGGACACTATCATTGGAGGACCCTTCTTGAGAGGTGTTTCCGGTGGTGAGAGGAAAAG 599
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 TAAGGATACTATCATTGGAGGACCCTTCTTGAGAGGTGTTTCAGGTGGTGAGAGGAAAAG 596
Query 600 AGTTAGTATAGGGCAAGAGATTCTTATAAACCCTAGTTTGCTTTTTCTTGATGAGCCTAC 659
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 597 GGTTAGTATAGGGCAAGAGATTCTTATAAACCCTAGTTTGCTCTTTCTTGATGAGCCCAC 656
Query 660 TTCTGGTCTTGATTCTACCACTGCTCAAAGGATCGTGTCGATTTTGTGGGAACTGGCTCG 719
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 TTCTGGGCTTGATTCTACCACTGCTCAAAGGATTGTGTCGATTTTGTGGGAACTGGCTCG 716
Query 720 TGGTGGAAGAACGGTCGTGACCACAATTCATCAACCTTCTAGTAGGTTGTTCTATATGTT 779
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGGTGGGAGAACGGTCGTGACTACAATTCATCAACCTTCTAGTAGGTTGTTCTATATGTT 776
Query 780 TGATAAGCTTCTGCTCCTTTCAGAAGGTAATCCGATCTACTTCGGGCTTGGATCCAGTGC 839
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 777 TGATAAGCTTCTGCTCCTTTCAGAAGGTAATCCGGTCTACTTCGGGCTTGGATCCAATGC 836
Query 840 TATGGATTATTTTGCTAGAGTTGGATGCTCCCCCTCAGTTGAAAGGATTAATCCCTCGGA 899
|||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 837 TATGGATTATTTTGCTAGCGTTGGATACTCCCCCTTAGTCGAAAGGATTAATCCCTCGGA 896
Query 900 TTTTCTCTTGGACATCGCAAACGGTGTTGGATCAGATGAATCCCAAAGACCAGAGGCTAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTTTCTCTTGGACATCGCAAACGGTGTTGGATCAGATGAATCCCAAAGACCAGAGGCTAT 956
Query 960 GAAAGCAGCTCTAGTTGCGTTTTACAAGACAAACCTGTTGGACAATGTTATCAATGAGGT 1019
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 GAAGGCAGCTCTAGTTGCGTTTTACAAGACAAACCTGTTGGACAGTGTTATCAATGAGGT 1016
Query 1020 TAAAGGACAAGATGATCTATGTAACAAACCAATAGAGAGTCCTCGTGGAGCGACCAATA- 1078
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 1017 TAAAGGACAAGATGATCTATGTAACAAACCAAGAGAGAGTTCTCGTGTAGCGACCAATAC 1076
Query 1079 CTAATGGAGAGTGGCCAACGACGTGGTGGCAGCAGTTTTGTGTTCTTTTGAAGAGAGGCC 1138
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CT-ATGGAGACTGGCCAACGACGTGGTGGCAGCAGTTTTGTGTTCTTTTGAAGAGAGGCC 1135
Query 1139 TTAAGCAAAGGCGTCACGATTCTTTCTCTGGCATGAAAGTTGCTCAGATATTCCTCGTCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 TTAAGCAAAGGCGTCACGATTCTTTCTCTGGCATGAAAGTTGCTCAGATATTCATCGTCT 1195
Query 1199 CTATCCTCTGTGGTCTTCTTTGGTGGCAAACGAAAATTTCTCGTTTACAAGATCAGATAG 1258
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1196 CTTTCCTCTGTGGTCTTCTTTGGTGGCAAACGAAAATTTCTCGATTACAAGATCAGATAG 1255
Query 1259 GGCTGTTGTTCTTTATATCATCCTTCTGGGCATTTTTCCCTCTCTTCCAACAAATCTTCA 1318
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1256 GGCTGTTGTTCTTTATCTCATCCTTTTGGGCATTCTTCCCTCTCTTCCAACAAATCTTCA 1315
Query 1319 CATTTCCTCAAGAGCGAGCAATGCTCCAGAAAGAACGTTCCTCGGGCG-TGTACAGGCTC 1377
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1316 CATTTCCTCAAGAGCGAGCAATGCTCCAGAAAGAACGTTCTTCGGG-GATGTACAGGCTC 1374
Query 1378 TCGCCTTACTTCATGTCCCGATTAGTCGGGGATCTACCAATGGAGCTTATTTTACCAACT 1437
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1375 TCGCCTTACTTCCTGTCCCGAGTAGTCGGGGATCTACCAATGGAGCTTATATTACCAACT 1434
Query 1438 TGTTTTCTTGTCATCACATATTGGATGGCCGGTCTAAACCATAACCTCGCAAACTTTTTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TGTTTTCTTGTCATCACATATTGGATGGCCGGTCTAAACCATAACCTCGCAAACTTTTTT 1494
Query 1498 GTGACCCTTTTGGTACTCCTCGTCCATGTCCTTGTCTCCGGTGGGCTAGGACTAGCCCTA 1557
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1495 GTGACCCTTTTGGTACTCCTCGTCCATGTCCTTGTCTCGGGTGGGCTAGGGCTAGCCCTA 1554
Query 1558 GGCGCCCTAGTTATGGACCAGAAGACAGCCACGACACTCGGGTCAGTCATAATGCTCACA 1617
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1555 GGTGCCCTAGTTATGGACCAGAAGTCAGCCACAACACTCGGGTCAGTCATAATGCTCACG 1614
Query 1618 TTTTTGTTAGCAGGAGGATACTACGTTCAACATGTCCCAGTGTTCATCTCTTGGATTAAA 1677
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1615 TTTTTGTTAGCAGGAGGATACTACGTTCAACATGTACCAGTGTTCATCTCTTGGATTAAA 1674
Query 1678 TACGTATCAATAGGTTACTATACCTATAAACTACTGATATTAGGTCAGTACACGGCGAAT 1737
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1675 TACGTATCAATCGGTTACTATACATATAAACTACTGATATTGGGTCAGTACACGGCGAAT 1734
Query 1738 GAGTGGTATCCATGTGGCGAAAATGGGATATTGAGGTGTCATGTTGGTGACTTTGAAGGT 1797
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1735 GAGTTGTATCCATGTGGCGATAATGGGAAATTGAGGTGTCATGTTGGTGACTTTGAAGGT 1794
Query 1798 ATCAAGCATATAGGATTTAATAGTGGATTGGTCTCTGCCTTAGCTTTGACTGCGATGCTT 1857
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1795 ATCAAGCATATAGGGTTTAATAGTGGATTAGTCTCTGCCTTAGCTTTAACTGCGATGCTT 1854
Query 1858 GTTGTTTATAGAGTTATTGCTTATATCGCTTTGACGAGGATTGGTAAGACCAAATCTGGC 1917
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTTGTTTATAGAGTTATAGCTTATATCGCTTTGACGAGGATTGGTAAGACCAAATCTGGC 1914
Query 1918 TGA 1920
|||
Sbjct 1915 TGA 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5