BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329002
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26830.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2069 0.0
> AT4G26830.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:13494572-13496487 REVERSE LENGTH=1522
Length=1522
Score = 2069 bits (1120), Expect = 0.0
Identities = 1292/1375 (94%), Gaps = 11/1375 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGTTTCTTTCCTACCTTGTTTAATTCTCATTCTTTCCCTCTTCTCAGCCATTGAC 60
||||||||||||||| |||||| || |||| ||||||||| || ||||||||||||||
Sbjct 1 ATGGCCGTTTCTTTCTTACCTT-ATT--TTCTGATTCTTTCCTTCCTCTCAGCCATTGAC 57
Query 61 GCACATTCTGGAATGATCGGAGTCAACTATGGCCGGATAGCTAACAACCTCCCGTCGCCG 120
||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 58 GCACATTCTGGAATGGTCGGAGTCAATTATGGTCGGATAGCTAACAATCTCCCGTCGCCG 117
Query 121 GAGAAAGTAGTGAACCTCCTGAAATCACAAGGAATCAACCGTATCAAAATCTTCGACACC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 GAGAAAGTAGTGAACCTCCTGAAATCTCAAGGAATCAACCGTATCAAAATCTTCGACACC 177
Query 181 GATAAGAATGTACTAACCGCACTTGCAAATTCCAGAATCAAAGTAATCGTAGCTCTCCCC 240
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 178 GATAAGAATGTACTAACCGCACTTGCAAATTCCAAAATCAAAGTAATCGTCGCTCTCCCT 237
Query 241 AACGAGCTTCTCTCCTCCGCCGCCTCCCACCAATCATTCGCCGACAACTGGATCAAAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 AACGAGCTTCTCTCCTCCGCCGCCTCCCACCAATCATTCGCCGACAACTGGATTAAAACC 297
Query 301 CACATAATGTCATACTTCCCAGCGACAGAGATCGAAGCTATCGCCGTTGGTAACGAAGTA 360
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 298 CACATAATGCCATACTTCCCAGCGACGGAGATCGAAGCTATCGCCGTCGGTAACGAAGTA 357
Query 361 TTCGTCGATCCGAAGAACACGCCCTATCTTGTCTCTGCGATGAAGAACATTCACACCTCT 420
||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 358 TTCGTCGATCCGACGATCACGCCGTATCTTGTCAATGCGATGAAGAACATTCACACCTCT 417
Query 421 CTGGTTAAGTATAACCTCGACAAAGCCATCAAGATCTCTTCTCCGATTGCTCTTAGCGCG 480
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 418 CTGGTTAAGTATAAACTCGACAAAGCCATCAAGATCTCGTCTCCTATTGCTCTTAGCGCG 477
Query 481 CTGGCTAATTCGTACCCGCCATCTTCCGGTTCTTTTAAACCGGATTTAATCGAACCGGTT 540
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 478 CTTGCTAATTCGTACCCGCCTTCCTCTGGTTCTTTTAAACCGGAATTAATCGAACCGGTT 537
Query 541 ATTAAACCAATGCTTGCTCTGCTACAACAAACGTCGTCGTTTCTCATGGTAAATGCTTAC 600
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 538 GTTAAACCAATGCTTGCTCTGCTTCAACAAACGTCGTCGTATCTTATGGTAAATGCTTAT 597
Query 601 CCGTTTTTCGCTTACGCAGCAAACGCCGATAAAATCTCTTTAGACTACGCTCTGTTTAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCGTTTTTCGCTTACGCAGCAAACGCCGATAAAATCTCTTTAGACTACGCTCTGTTTAAA 657
Query 661 CAAAACGCCGGGAATATAGATTCCGGTACCGGATTGAAGTACAACAGTCTTTTTGACGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 GAAAACGCCGGGAATATAGATTCCGGTACCGGATTGAAGTACAACAGTCTCTTTGACGCT 717
Query 721 CAAATCGACGCCGTTTACGCGGCATTGTCTGCCGTCGGATTTAAAGGCGTTAAGGTGATG 780
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 CAAATAGACGCCGTTTACGCGGCATTGTCCGCCGTCGGATTTAAAGGCGTTAAGGTGATG 777
Query 781 GTGACGGAGACAGGGTGGCCTTCCGTTGGAGACGAGAACGAAATTGGTGCAAGCGAATC- 839
|||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 778 GTGACGGAAACAGGGTGGCCTTCCGTTGGAGATGAGAATGAGATTGGTGCAAGCGAATCT 837
Query 840 AACCGCGGCGGCGTATAACGGTGGACTCGTGAAGAGAGTGTTAACCGGTAAAGGAACGCC 899
|| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 838 AA-CGCGGCGGCGTATAACGCCGGACTTGTGAAGAGAGTGTTAACGGGTAAAGGAACACC 896
Query 900 TTTAAGACCGAAGGAGCCACTTAACGTCTATTTATTCGCTTTATTCAACGAAAACCAGAA 959
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTAAGACCGACGGAGCCACTTAACGTCTATTTATTCGCTTTATTCAACGAAAACCAGAA 956
Query 960 ACCGGGGCCAACGTCTGAGAGAAACTACGGAATGTTTTACCCAAACGAAGGGAAAGTGTA 1019
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 ACCGGGGCCAACGTCTGAGAGAAACTACGGTTTGTTTTACCCAAACGAAGGGAAAGTGTA 1016
Query 1020 CGACGTTCCGTTCTCCAGAGTGAGGTCAACG-C-C-GGTCAACGGTAACAGAGATCATGT 1076
| ||||||||||| | | | || |||||| | | ||||||||||||||||| | | ||
Sbjct 1017 CAACGTTCCGTTCACTAAAA--AG-TCAACGACGCCGGTCAACGGTAACAGAGGTAAAGT 1073
Query 1077 CCCGGTGACGCATGAGGGACACACGTGGTGCGTTTCGAACGGAGAGGTTGCGAAGGAGAA 1136
||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1074 TCCGGTGACGCACGAGGGACATACATGGTGCGTTTCGAACGGAGAGGTAGCGAAGGAGAA 1133
Query 1137 GCTTCAGGAGGCTCTTGATTACGCTTGCGGAGAAGGAGGAGCTGATTGCCGTCCGATTCA 1196
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1134 ACTTCAGGAGGCTCTTGATTACGCTTGCGGAGAAGGAGGAGCTGATTGCCGCCCGATTCA 1193
Query 1197 GCCAGGTGCCACGTGTTATCATCCTGAGTCGTTAGAAGCTCACGCTTCGTACGCTTTTAA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1194 GCCAGGTGCCACGTGTTATCATCCTGAGTCGTTAGAAGCTCACGCTTCGTACGCCTTCAA 1253
Query 1257 CAGTTACTACCAGAAGAACTCACGTCGTGTTGGTACGTGCTACTTTGGTGGAGCTGCTCA 1316
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1254 TAGTTACTACCAGAAGAACTCACGTCGTGTTGGTACGTGCTTCTTTGGTGGAGCTGCTCA 1313
Query 1317 CGTCGTCACGCAACCTCCTCGATATGGAAAATGCGAGTTTCCCACCGGACATTGA 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CGTCGTCACGCAACCTCCTCGATATGGAAAATGCGAGTTTCCCACCGGACATTGA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5