BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329010
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26740.1 | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:... 1236 0.0
> AT4G26740.1 | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473516-13475328
REVERSE LENGTH=1063
Length=1063
Score = 1236 bits (669), Expect = 0.0
Identities = 715/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 1 ATGGGCTCGAAGACGGAGATAATGGAGAGAGACGCAATGGCTACGGTGGCTCCCTATGCG 60
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 51 ATGGGGTCAAAGACGGAGATGATGGAGAGAGACGCAATGGCTACGGTGGCTCCCTATGCG 110
Query 61 CCGGTCACTTACCATCGCCGTGCTCGCGTTGACTTGGATGATAGACTTCCTAAACCTTAT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 111 CCGGTCACTTACCATCGCCGTGCTCGTGTTGACTTGGATGATAGACTTCCTAAACCTTAT 170
Query 121 ATGCCAAGAGCATTGCAAGCACCAGACAGAGAACATCCGTACGGAACCCCAGGCCATAAG 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 171 ATGCCAAGAGCATTGCAAGCACCAGACAGAGAACACCCGTACGGAACTCCAGGCCATAAG 230
Query 181 AATTACGGACTTAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATGGATGATAATGGC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 231 AATTACGGACTTAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATCGATGATAATGGC 290
Query 241 ATCATCTACCCTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCATTGGC 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATCATTTACCCTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCATTGGG 350
Query 301 TCGCTTATAATAGCAGCTGTTATCAACCTGACCCTTAGCTATGCTACTCTTCCGGGGTGG 360
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 351 TCGCTTATAATAGCCGCTGTTATCAACCTGACCCTTAGCTATGCCACTCTTCCGGGGTGG 410
Query 361 TTACCTTCACCTTTCTTCCCTATATACATACACAACATACACAAGTCCAAGCATGGAAGC 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 411 TTACCTTCACCTTTCTTCCCTATATACATACACAACATACACAAGTCAAAGCATGGAAGT 470
Query 421 GACTCAAAAACATATGACAATGAAGGGAGGTTTATGCCGGTGAATCTTGAGTTGATATTT 480
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 471 GATTCAAAAACATATGACAATGAAGGAAGGTTTATGCCGGTGAATCTTGAGTTGATATTT 530
Query 481 AGCAAATATGCGAAAACCTTGCCAGATAAGTTGAGTCTTGGAGAACTATGGGAGATGACA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 531 AGCAAATATGCGAAAACCTTGCCAGACAAGTTGAGTCTTGGAGAACTATGGGAGATGACA 590
Query 541 GAAGGAAACCGTGACGCTTGGGACATTTTCGGATGGATCGCAGGCAAAATAGAGTGGGGA 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 591 GAAGGAAACCGTGACGCTTGGGACATTTTTGGATGGATCGCAGGCAAAATAGAGTGGGGA 650
Query 601 CTCTTGTACTTGCTAGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCGATTAGGCGG 660
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 651 CTGTTGTACTTGCTAGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCTATTAGGCGG 710
Query 661 TGTTTCGATGGAAGCTTGTTCGAGTACTGCGCCAAGATCTACGCCGGTATCAGTGAAGAC 720
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 711 TGTTTCGATGGAAGCTTGTTCGAGTACTGTGCCAAAATCTACGCTGGTATCAGTGAAGAC 770
Query 721 AAGACAGCCTACTACTAA 738
|||||||| |||||||||
Sbjct 771 AAGACAGCATACTACTAA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5