BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329014
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha | ... 1773 0.0
AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 bet... 1053 0.0
AT4G26701.1 | Symbols: | DNA binding;DNA topoisomerase type Is... 364 2e-99
> AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha
| chr5:22424577-22429502 REVERSE LENGTH=3077
Length=3077
Score = 1773 bits (960), Expect = 0.0
Identities = 1861/2279 (82%), Gaps = 130/2279 (6%)
Strand=Plus/Plus
Query 150 AATTATTAAAGATGAGTCTGATGATGATGAAGCTCCAATATCGTCAAGGTTTCGAAAGAA 209
|||||| ||||| ||||| | ||||||||| ||||||| ||||||| |||||| |||||
Sbjct 643 AATTATAAAAGACGAGTC--A-GATGATGAAACTCCAATCTCGTCAATGTTTCGGAAGAA 699
Query 210 GAATGGTAATGGGGTTTCAGGTAGCAAACAAGACTCT--ACTGATGAAAATAAATCTTTG 267
|| || || |||| | ||||| || ||| || |||| | ||||||||| ||| |||||
Sbjct 700 GATTGATAGTGGGATGTCAGGGGGC-AACCAG-CTCTCCAATGATGAAAAGAAACCTTTG 757
Query 268 GTT-AATAAGTTG-A--AGAATGGCTCCACACTTGAGCATGAATGTTCC-AA-GGT-A-- 318
||| || |||||| | ||||||| |||||| || || ||||| || || || ||| |
Sbjct 758 GTTCAA-AAGTTGCATCAGAATGGTTCCACAGTTAAGAATGAA-GTGCCGAATGGTAAGG 815
Query 319 T-CT-GGCAAGAGAATTCTGGAGAAGAGCAGTTCTGCAGATCAATCTT-CTATGAAGAA- 374
| | || |||||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct 816 TATTAGGTAAGAGACCTCTGGAGAAGAATAGTTCTGCAGATCAATCTTCCT-TGAAGAAG 874
Query 375 GCTCAAGGTATCATCTTCATCTACGTCAGTTG-CCATGAAACAAGATTCTTTGAA-AAA- 431
|| ||| ||||| ||||| |||| |||| || ||||||||||||||| | || |||
Sbjct 875 GC-CAAAATATCAGCTTCACCTACTTCAG-TGAAAATGAAACAAGATTCTGTCAAGAAAG 932
Query 432 A-CTAGGTGATAAGAGGAA-GGTTGAAGTATCACCTAAAAA--ATTG-T---CAGTCA-- 481
| ||| ||||||| |||| |||| || ||||| ||||| | | | |||| |
Sbjct 933 AGATAGATGATAAG-GGAAGGGTTTTGGTTTCACC-AAAAATGAAAGCTAAACAGTTATC 990
Query 482 AAGAAGATGAA-ACT-GAAgatgatgatgatgatgatgatgatgTTCCCAT-TGCCAAGA 538
| ||| ||| | | ||| ||||||||||||||||||||||||||| || | ||||||
Sbjct 991 TACCAGA-GAAGA-TGGAA-CTGATGATGATGATGATGATGATGTTCCGATAT-CCAAGA 1046
Query 539 GAATCAAGTCAGAATCCTCCAAGTA-TAAAACACCCTCTGCAAAGCCTAAAGTGGTAAAA 597
|| |||| ||||| |||||||| | ||| ||| | ||||||||||| |||| ||||||
Sbjct 1047 GATTCAAATCAGATTCCTCCAA-CAGTAACACATCATCTGCAAAGCCAAAAGCAGTAAAA 1105
Query 598 C-AGAGTTCTACTTCATCAGCTACGAAGTCC-AAAGTGA-AAAGAGTAGTTTCTCCTCCG 654
| | | |||||||||||||||| | ||| || |||| || ||| || ||||||||| |
Sbjct 1106 CTA-AATTCTACTTCATCAGCTGCAAAG-CCAAAAGCGAGAAA-TGTCGTTTCTCCTAGG 1162
Query 655 TCCAAGA-CAAGGAGCAAAAAGTCCAAGAAAGTGATGAACGAATCTAAGT-TTGCTAAGA 712
||| ||| ||| || |||||| | |||||||| | ||| || || || | || | | |
Sbjct 1163 TCC-AGAGCAATGACCAAAAACACTAAGAAAGTAACGAAGGACTCAAAATATT-CCACGT 1220
Query 713 GTTC-AAA--A--ACCTTACCTACTGGCGATGGTAAAAAGAAATGGACAACCTTGGTACA 767
||| ||| | ||||| ||| |||| ||||| ||||||||||||| || ||||| ||
Sbjct 1221 CTTCAAAATCATCACCTT-CCT-CTGGAGATGGGCAAAAGAAATGGACTACTTTGGTGCA 1278
Query 768 CAATGGTGTCACT-TTTCCACCTCCATATAAACCTCATGGGGTTCAGATTTTATATAAGG 826
||| ||||| | | |||||||| ||||| || |||||||| || ||||||| || ||||
Sbjct 1279 CAACGGTGT-AATATTTCCACCGCCATACAAGCCTCATGGCATTAAGATTTTGTACAAGG 1337
Query 827 GGAATCCAGTCAACTTATCTCCTGACCAAGAAGAGGTTGCAACGATGTTTGCTGTGATGA 886
|||| || || || || || ||| |||||||||||||| || |||||||| |||||||
Sbjct 1338 GGAAACCTGTTGACCTAACTATTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTGATGA 1397
Query 887 GAGAGACAGACTT-TTATAATAAACCTCGATTTAGGGAAAATTTCTGGAATGATTGGCGA 945
|||||||||| || ||||| |||||||| |||| |||| |||||||||||||| ||||||
Sbjct 1398 GAGAGACAGA-TTATTATACTAAACCTCAATTTCGGGAGAATTTCTGGAATGACTGGCGA 1456
Query 946 AAACTACTTGGCAAGAATCATGTGATACAGAAGCTGGATGATTGTGACTTTACACCAATA 1005
| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1457 AGACTGCTTGGCAAGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATA 1516
Query 1006 TATGATTGGCATTTGg-a-agaaa-agaagaagaaa-aaagcttcgc-c--a-gag-aaa 1056
||||| |||||||||| | ||||| ||||||||||| ||| | || | | ||| |||
Sbjct 1517 TATGAGTGGCATTTGGAAGAGAAAGAGAAGAAGAAACAAA--TGAGCACAGAGGAGAAAA 1574
Query 1057 aa-c--------ccga-aaca-g--g---g-ggagaaaTATATGTGGGCTGTTGTGGACG 1099
|| | || || | | | | |||||||||||||||||||||||| || |
Sbjct 1575 AAGCTTTGAAAGAGGAGAAAATGAAGCAAGAGGAGAAATATATGTGGGCTGTTGTTGATG 1634
Query 1100 GTGTCAAAGAGAAGGTTGGGAATTTCAGTGTAGAACCTCCCGGGCTATTCCGAGGTCGAG 1159
|||||||||||||| |||| |||||||| || ||||| || || || ||| |||| || |
Sbjct 1635 GTGTCAAAGAGAAGATTGGTAATTTCAGAGTGGAACCGCCTGGCCTTTTCAGAGGCCGTG 1694
Query 1160 GAGAACATCCCAAGATAGGAAAATTGAAA-AGGCGTATATATCCTA-GTGACATCA-CTC 1216
|||||||||||||||| |||||| | ||| | |||||| |||| | | || |||| ||
Sbjct 1695 GAGAACATCCCAAGATGGGAAAACT-AAAGAAGCGTATCCATCC-ATGCGAGATCACCT- 1751
Query 1217 TAAATATCGGGAAAGATGCTCCTATACCTGAATGTCCCATCCCTGGTGAAAGATGGAAAG 1276
||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||
Sbjct 1752 TAAATATCGGGAAAGGTGCTCCTATTCCAGAATGTCCAATTGCTGGTGAAAGATGGAAAG 1811
Query 1277 AAGTAAAGCATGATAACACAGTCATCTGGCTAGCTATCTGGAAAGATCCTATTCACCCGG 1336
|||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||
Sbjct 1812 AAGTAAAGCATGATAACACAGTCACCTGGCTAGCTTTCTGGGCTGATCCTATTAACCCAA 1871
Query 1337 GACGC-TACAAGTATGT-TTCTCTGTCAGCTAGCAGTTCACAGAAAGGTCAAAGCGACAA 1394
| | | ||||||||| || | || |||| ||||||| | |||||| | ||||||||
Sbjct 1872 AA-GAATTCAAGTATGTATTTT-TGGGAGCTGGCAGTTCTCTGAAAGGGCTGAGCGACAA 1929
Query 1395 -GAAGAAGTATGAGAAAGCCAGGAATCTTAAGGACCACATAGAAAATATAAGAGCAACGT 1453
|| |||||| |||||||| |||||||||| ||| || ||||| ||||||||| |||| |
Sbjct 1930 AGA-GAAGTACGAGAAAGCTAGGAATCTTACGGATCATATAGATAATATAAGAACAACAT 1988
Query 1454 ACACCAAGAATTTTACTGCCAAGGATGTTTCAAATCGA--CAAATAGCTGTGGCTACCTA 1511
||||||||||||||||||||||||||||| |||| || ||||| |||||||| || ||
Sbjct 1989 ACACCAAGAATTTTACTGCCAAGGATGTTA-AAAT-GAGGCAAATTGCTGTGGCGACATA 2046
Query 1512 TCTCATTGATAAATTGGCACTTAGAGCTGGAAATGAGAAGGATGATGATGAGGCGGACAC 1571
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2047 TCTCATTGATAAATTGGCGCTTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACAC 2106
Query 1572 AGTTGGTTGCTGTACATTAAAAGTAGGAAATGTGGAGTGTGTTCCTCCAAATAAGCTAAA 1631
|||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 2107 TGTTGGTTGTTGTACTTTAAAAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAA 2166
Query 1632 GTTTGACTTCCTTGGTAAAGATTCAATCCAATATGTGAATACCGTCGAAGTTGAACCTCT 1691
|||||| || |||||||| ||||||||||| |||||||| || ||||| ||||| |||||
Sbjct 2167 GTTTGATTTTCTTGGTAAGGATTCAATCCAGTATGTGAACACAGTCGAGGTTGAGCCTCT 2226
Query 1692 TGTTTACAAAGCCATTGCACAGTTCCGGGCTGGTAAATC-AAATTCAGACGATCTTTTTG 1750
||||||||| ||||||| |||||||| ||| || ||||| ||| |||| ||||||||||
Sbjct 2227 TGTTTACAAGGCCATTGGACAGTTCCAGGCGGGAAAATCCAAAA-CAGATGATCTTTTTG 2285
Query 1751 ATGAGTTAGACACAAGCAAACTGAATGCTCATCTT-AAGGAGCTTGTAACTGGCCTCACA 1809
|||||||||||||||| ||||||||||||||| || ||||| ||||| |||| ||||||
Sbjct 2286 ATGAGTTAGACACAAGTAAACTGAATGCTCAT-TTGAAGGAACTTGTGCCTGGTCTCACA 2344
Query 1810 GCTAAAGTATTCCGTACTTACAATGCATCCATCACGCTGGATGTAATGTTGAGGCAAGAA 1869
||||||||||||||||| || ||||| |||||||| |||||| |||| |||| ||||||
Sbjct 2345 GCTAAAGTATTCCGTACATATAATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAA 2404
Query 1870 ACCAGAGAGGGTGATGTTAAACAGAAAGTAGTAGTTTATCAGCAAGCAAACAAGGAGGTA 1929
|||| ||| || ||||||| || ||| |||||||||||||| ||||||| ||||||||
Sbjct 2405 ACCAAAGATGGCGATGTTACTCAAAAAATAGTAGTTTATCAGAAAGCAAATAAGGAGGTT 2464
Query 1930 GCGTTAATTTGTAATCACCAGCGTACCGTTTCAAAGTCTCACGGTGCACAAATCCAGAGA 1989
|| |||| || ||||| |||||||| || |||||| | || ||||| ||||| | | |
Sbjct 2465 GCCATAATCTGCAATCATCAGCGTACTGTATCAAAGACACATGGTGCGCAAATTGAAAAA 2524
Query 1990 TTGGCTG-GAAAAATAGAAGAACTCAAGGAGGGTCTTAAAGAACTCAAAAAC-AAT-TTG 2046
||| ||| || || |||||||||||||||||| ||||||||| ||||||| | ||| |||
Sbjct 2525 TTGACTGCGAGAA-TAGAAGAACTCAAGGAGGTTCTTAAAGAGCTCAAAA-CTAATCTTG 2582
Query 2047 GAGAGGGCTAAAAAGGGAAAATCTCCATTGGAAGGTTCAGATGGAAAGAAAACAAGAAAC 2106
| ||||||||||||||||| | |||||||||||||| ||||||||||| | |||| |
Sbjct 2583 -ACCGGGCTAAAAAGGGAAAACCACCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGC 2641
Query 2107 ATA-ACTCCAGAA-GCGTGGGAGAAGAAGATAGCTCAACAGAA-GATGAAGATAGAGAAG 2163
|| | ||| || ||||||||||||||||| |||||||||| | | ||||| |||||
Sbjct 2642 TTAGAA-CCA-AACGCGTGGGAGAAGAAGATTGCTCAACAGAGTGCT-AAGATCGAGAAA 2698
Query 2164 ATGGAAGGAGACATGCAGACAAAGGAGGACTTGAAAACCGTGGCGCTGGGCACGTCTAAG 2223
|||||| |||||||||| ||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 2699 ATGGAACGAGACATGCATACAAAAGAGGACTTGAAAACAGTGGCACTGGGCACGTCTAAG 2758
Query 2224 ATCAACTACATGGATCCTAGGATCACGGTCGCGTGGTGCAAACGCCATGAAGTACCCATT 2283
||||||||| |||||||||| ||||| || || ||||||||||| ||||||||||| ||
Sbjct 2759 ATCAACTACCTGGATCCTAGAATCACAGTTGCATGGTGCAAACGTCATGAAGTACCAATC 2818
Query 2284 GAAAAGATATTCAACAAGTCTCTGCTGGAGAAATTTGCGTGGGCAATGGACGTAGAACC 2342
||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 2819 GAAAAGATATTCACCAAGTCTCTTTTGGAGAAGTTTGCGTGGGCAATGGATGTAGAACC 2877
> AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta
| chr5:22430176-22435076 REVERSE LENGTH=3068
Length=3068
Score = 1053 bits (570), Expect = 0.0
Identities = 1371/1747 (78%), Gaps = 98/1747 (6%)
Strand=Plus/Plus
Query 671 AAAAGTCCAAGAAAGT-GATGAACGAATCTAAGT-TTGCTAAGA-GTTCAAAAACCTTAC 727
||||| |||| ||| | | |||| || ||||| | || | || | ||| ||| | ||||
Sbjct 1126 AAAAGCCCAACAAA-TGGGTGAAAGATTCTAAATATT-CGAA-ATCTTCTAAATCATTAC 1182
Query 728 CTACTGGCGATGGTAAAAAGAAATGGACAACCT-TGGTA-CACAATGGTGTCACTTTTCC 785
|| |||| ||||| |||||||||||| || || | | ||||||||||| | ||||||
Sbjct 1183 CTTCTGGAGATGGGCAAAAGAAATGGA-AAACTCT-ACAGCACAATGGTGTTATTTTTCC 1240
Query 786 ACCTCCATATAAACCTCATGGGGTTCAGATTTTATAT-AAGGGGAATCCAGTCAACTTAT 844
|||||||||||| | |||||||||| |||| || | | |||| || || || |||||
Sbjct 1241 ACCTCCATATAAGCGTCATGGGGTTAAGATATTGT-TCCAGGGAAAGCCTGTTGACTTAA 1299
Query 845 CTCCTGACCAAGAAGAGGTTGCAACGATGTTTGCTGTGATGAGAGAGACAGACTTTTATA 904
||||||| ||||||||||||||||| |||||||| |||||||| || ||||| | |||||
Sbjct 1300 CTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTATA 1359
Query 905 ATAAACCTCGA-TTTAGGGAAAATTTCTGGAATGATTGGCGAAAACTACTTGGCAAGAAT 963
| ||||| | || || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 1360 AAAAACC-AAAGTTCAGAGAGAATTTCTGGAATGATTGGCGGAAACTACTTGGAAAGAAC 1418
Query 964 CATGTGA-TACAGAAG-CTGGATGATTGTGACTTTACACCAATATATGATTGGCATTTG- 1020
||| ||| || | ||| | |||||||||||||| || || |||||||| ||| || ||
Sbjct 1419 CATATGATTA-A-AAGTTTAGATGATTGTGACTTCACTCCCATATATGAATGGTATATGC 1476
Query 1021 -gaagaa-aaga-agaagaaa-aaa-g-cttc-g-ccag---a-ga-----aaa-acccg 1062
| |||| ||| | |||||| ||| | || | | || | || ||| | |
Sbjct 1477 AGGAGAAGGAGACA-AAGAAACAAATGACTGCAGAAGAGAAAAGGATTGTGAAAGAGGAG 1535
Query 1063 -----aaa-cagggggagaaaTATATGTGGGCTGTTGTGGACGGTGTCAAAGAGAAGG-T 1115
||| |||| |||||||||||||||||||||| | || ||||||| ||| ||| |
Sbjct 1536 AAATTAAAGCAGGAGGAGAAATATATGTGGGCTGTTCTTGATGGTGTCAGGGAG-AGGAT 1594
Query 1116 TGGGAATTTCAGTGTAGAACCTCCC-GGGCTATTCCGAGGTCGAGGAGAACATCCCAAGA 1174
||| |||||||| || || || ||| ||| | || ||||| || ||||||||||||||||
Sbjct 1595 TGGAAATTTCAGAGTTGAGCC-CCCTGGGTTGTTTCGAGGCCGGGGAGAACATCCCAAGA 1653
Query 1175 TAGGAAAATTGAAAAGGCGTATAT-ATCCTAGTGACATCACTCTAAATATCGGGAAAGAT 1233
| || ||| |||||| ||| || | |||| |||| || || | || || || |||||
Sbjct 1654 TGGGGAAACTGAAAAAGCGGAT-TCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG 1712
Query 1234 GCTCCTATACCTGAATGTCCC-ATCCCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1292
|| ||||| || ||||| ||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1713 GCGCCTATTCCAGAATG-CCCTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAA 1771
Query 1293 CACAGTCATCTGGCTAGCTATCTGGAAAGATCCTATTC-A-CC-CGGGACGCTACAAGTA 1349
|| || | |||||| ||| | |||| ||||||| || | || || | | ||||||
Sbjct 1772 TACTGTTACCTGGCTTGCTTTTTGGAGTGATCCTA-TCAATCCAAAAGA-G-TTCAAGTA 1828
Query 1350 TGT-TTCTCTGTCAGCTAGCAGTTCACAGAAAGGTCAAAGCGAC-AAGAAGAAGTATGAG 1407
||| |||| || ||||||||||||| ||| || ||||||||| ||| |||||||||||
Sbjct 1829 TGTATTCT-TGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAAG-AGAAGTATGAG 1886
Query 1408 AAAGCCAGGAATCTTA-AGGACCACATAGAAAATATAAGAGCAACGTACACC-AAGAATT 1465
||||| ||||| | || | |||| |||| | ||| |||||| | |||||| ||| |||
Sbjct 1887 AAAGCGAGGAAGC-TACATAACCATATAGGGAGTATTAGAGCAGCATACACCAAAG-ATT 1944
Query 1466 TTACTGCCAAGGATGTTTCAAATCGACAAATAGCTGTGGCTACCTATCTCATTGATAAAT 1525
||| | ||||||||| |||| || |||||||| ||||| || |||||||| |||||
Sbjct 1945 TTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTGGCAACATATCTCATCGATAAGC 2004
Query 1526 TGGCACTTAGAGCTGGAAATGAGAAGGATGATGATGAGGCGGACACAGTTGGTTGCTGTA 1585
| || ||||| |||||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 2005 TAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGGTTGTTGTA 2064
Query 1586 CATTAAAAGTAGGAAATGTGGAGTGTGTTCCTCCAAATAAGCTAAAGTTTGACTTCCTTG 1645
|||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2065 CATTGAAAGTAGGAAACGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTG 2124
Query 1646 GTAAAGATTCAATCCAATATGTGAATACCGTCGAAGTTGAACCTCTTGTTTACAAAGCCA 1705
||||||| || || || ||||| || || || || ||||| ||||| || || || || |
Sbjct 2125 GTAAAGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAA 2184
Query 1706 TTGCACAGTTCCGGGCTGGTAAATC-AAATTCAGACGATCTTTTTGATGAGTTAGACACA 1764
||| ||||||| || || ||||| ||| | || ||||| ||||||||| |||| ||
Sbjct 2185 TTGGGCAGTTCCAAGCAGGAAAATCGAAA-ACCGATGATCTCTTTGATGAGCTAGATAC- 2242
Query 1765 AGC-AAACTGAATGCTCATCTTAAGGAGCTTGTAACTGGCCTCACAGCTAAAGTATTCCG 1823
| ||||| ||| ||||||||||||||||| | |||| |||||||| |||||||||||
Sbjct 2243 TTCAAAACTCAATACTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGTATTCCG 2302
Query 1824 TACTTACAATGCATCCATCACGCTGGATGTAATGTTGAGGCAAGAAACCAGAGAGGGTGA 1883
||| || |||||||||||||| ||||| |||||||||| ||||||||||||| |||||
Sbjct 2303 TACGTATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGACGGTGA 2362
Query 1884 TGTTAAACAGAAAGTAGTAGTTTATCAGCAAGCAAACAAGGAGGTAGCGT-TAATTTGTA 1942
||| | ||||| || |||||||||||||| ||||||||||| || | | |||||||
Sbjct 2363 CGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCGAACAAGGAGGTTGC-TATCATTTGTA 2421
Query 1943 ATCACCAGCGTACCGTTTC-AAAGTCTCACGGTGCACAAATCCAG-AGATTGGCTG-GAA 1999
| || || ||||| || || ||| |||||||| |||||| | || || |||||| | |
Sbjct 2422 ACCATCAACGTACTGTCTCGAAA-TCTCACGGAGCACAAGTGGAGAAG-CTGGCTGTG-A 2478
Query 2000 AAATAGAAGAACTCAA-GGAGGGTCTTAAAGAACTCAAAAACAATTTGGAGAGGGCTAA- 2057
||||||||||||| || |||| | ||||| || || | || | || ||||||||
Sbjct 2479 AAATAGAAGAACT-AAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAAG 2537
Query 2058 AAAGGGAA-AATCTCCATTGGAA--GGTTCAGATGGAAAGA-AAACAAGAAACATAACTC 2113
||| |||| || | || || || || || |||||||||| ||| || ||| |||| |
Sbjct 2538 AAA-GGAAGAA-CACCGTT--AATGGGATCTGATGGAAAGAGAAA-GAGGAACTTAACAC 2592
Query 2114 CAGAAGCGTGGGAGAAGAAGAT-A-GCTCAACAG-AAGATGAAGATAGAGAAGATGGAAG 2170
| ||||| | |||||||||||| | || ||| | ||| | ||||| ||||||||||||
Sbjct 2593 CTGAAGCATTGGAGAAGAAGATAATGC-AAAC-GCAAGGT-AAGATCGAGAAGATGGAAA 2649
Query 2171 GAGACATGCAGACAAAGGAGGACT-TGAAAACCGTGGCGCTGGGCACGTCTAAGATCAAC 2229
|||| ||||| ||||| || || | ||||||| || || ||||||| ||||||||||||
Sbjct 2650 GAGATATGCAAACAAAAGAAGA-TATGAAAACTGTCGCATTGGGCACATCTAAGATCAAC 2708
Query 2230 TACATGGATCCTAGGATCACGGTCGCGTGGTGCAAACGCCATGAAGTACCCATTGAAAAG 2289
|||||||||||||||||||| || |||||||||||||| ||||| || |||||||| |||
Sbjct 2709 TACATGGATCCTAGGATCACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAG 2768
Query 2290 ATATTCAACAAGTCTCTGCTGGAGAAATTTGCGTGGGCAATGGACGTAGAACCTCACTTC 2349
||||| ||||||||||| |||| || || || ||||||||||| || || ||| | |||
Sbjct 2769 ATATTTAACAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTTC 2828
Query 2350 ACATTCT 2356
| |||||
Sbjct 2829 AGATTCT 2835
> AT4G26701.1 | Symbols: | DNA binding;DNA topoisomerase type
Is | chr4:13467625-13468273 FORWARD LENGTH=549
Length=549
Score = 364 bits (197), Expect = 2e-99
Identities = 220/231 (95%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 2129 AGA-AGATAGCTCAACAGAAGATGAAGATAGAGAAGATGGAAGGAGACATGCAGACAAAG 2187
||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 101 AGATAGATAGCTCAACAGACGATGAAGATAGAGAAGATGGAACGAGACATGCAGACAAAA 160
Query 2188 GAGGACTTGAAAACCGTGGCGCTGGGCACGTCTAAGATCAACTACATGGATCCTAGGATC 2247
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 161 GAGGACTTGAAAACCGTGGCGTTGGGCACCTCTAAGATCAACTACATGGATCCTAGGATC 220
Query 2248 ACGGTCGCGTGGTGCAAACGCCATGAAGTACCCATTGAAAAGATATTCAACAAGTCTCTG 2307
|||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 221 ACGGTCGCATGGTGCAAACGTCATGAAGCACCCATTGAAAAGATATTCAACAAGTCACTT 280
Query 2308 CTGGAGAAATTTGCGTGGGCAATGGACGTAGAACCTCACTTCACATTCTAA 2358
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CTGGAGAAATTTGCGTGGGCAATGGACGTAGAACCTCACTTCACATTCTAA 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5