BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329038
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26440.1 | Symbols: WRKY34, ATWRKY34, MSP3 | WRKY DNA-bindin... 2494 0.0
AT5G56270.1 | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protei... 248 1e-64
> AT4G26440.1 | Symbols: WRKY34, ATWRKY34, MSP3 | WRKY DNA-binding
protein 34 | chr4:13357596-13359551 REVERSE LENGTH=1708
Length=1708
Score = 2494 bits (1350), Expect = 0.0
Identities = 1599/1718 (93%), Gaps = 22/1718 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTTTGATAATGAAGCTGGTGTAATGGGAGAATGGTTTGACTGTAGTA-T--T 57
||||||||| |||||||| |||||| |||||||||||||||||| |||||||||| | |
Sbjct 2 ATGGCTGGTATTGATAATAAAGCTGCTGTAATGGGAGAATGGTTCGACTGTAGTACTACT 61
Query 58 AACCACAGGAAGAGATCAAAAGCGGAACTTGGTAGAGACTTTTCTTTAGAA-TACATCAA 116
||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||
Sbjct 62 AACCACAGGAAGAGATCGAAAGCGGAACTTGGTAGAGAGTTTTCTTTA-AATTACATCAA 120
Query 117 GAAAGAGGATTCTTTGCATACCAGCTTTCAAGAAACACCGAGTTGTTCACGAGGAGCTCT 176
||| |||||||||||||| |||| |||||||| | | | ||||||||||||||||
Sbjct 121 GAATGAGGATTCTTTGCAAACCACCTTTCAAG--A-A---A---GTTCACGAGGAGCTCT 171
Query 177 TCGTGAAAGGATTGCTGCGAGATCTGGGTTTATTGCACCAAGGTTAAACACTGAAGATAT 236
|||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||||
Sbjct 172 TCGTGAAAGGATTGCTGCGAGATCCGGGTTTAATGCACCGTGGTTAAACACTGAGGATAT 231
Query 237 TCTTCAGTCGACATATTTAACCATCTCTTCTCCTGGTCTTAGTCCTGCAACTCTGTTAGA 296
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCTTCAGTCGAAATCTTTAACCATCTCTTCTCCTGGTCTTAGTCCTGCAACTCTGTTAGA 291
Query 297 GTCTCCTGTTTTCCTCTCAAACCCTTCGCTATCTCCGACAACCGGGAAGCTCTCATCACT 356
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 292 GTCTCCTGTTTTCCTCTCAAACCCTTTGCTATCTCCAACAACCGGGAAGCTCTCATCAGT 351
Query 357 ACCTTCTGATAAGGCTAAAGAAGAGTTATTTGACGGCATTACCACATCCTTAGCCTTCCA 416
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 352 ACCTTCTGATAAGGCTAAAGCTGAGTTATTTGACGACATTACCACATCCTTAGCCTTCCA 411
Query 417 ATCCATTTCAGGAAGTAGCCTTGATCCTACAAACATCGCTTTAGAAACCGATGATTCCCA 476
| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 412 AACCATTTCAGGAAGTGGCCTTGATCCTACTAACATCGCTTTAGAACCCGATGATTCCCA 471
Query 477 AGACTATGAGGAAAGACAGCTCGGCGGTTTAGGAGACTCGATTGCTAGTGGTGCACCTGC 536
||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 472 AGACTATGAAGAAAGACAGCTCGGCGGTTTAGGAGACTCGATGGCTTGTTGTGCACCTGC 531
Query 537 AGATGATGGATACAACTGGAGAAAATATGGACAGAAGCTAGTTAAAGGAAGTGAGTATCC 596
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 532 AGATGATGGATACAACTGGAGAAAATATGGACAAAAGCTAGTTAAAGGAAGTGAGTATCC 591
Query 597 GCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAGGTCAAGAAGAAGGTTGAACGGTC 656
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 592 GCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAGGCCAAGAAGAAGGTTGAACGGTC 651
Query 657 TCGGGAAGGTCATATTATAGAGATCATATACACAGGAGCTCATAAT-CACCCCAAACCTC 715
|||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||
Sbjct 652 TCGGGAAGGTCATATTATAGAGATCATATACACAGGAGATCAT-ATACACAGCAAACCTC 710
Query 716 CACCTAATCGCCGCTCAGGGATTGGATCATCCGGTACAGGCCAAGACATGCAAATAGATG 775
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 711 CACCTAACCGCCGGTCAGGGATTGGATCATCCGGTACTGGCCAAGACATGCAAATAGATG 770
Query 776 GAACAGAACAAGAAGGTTATCCTGGAACCAATGAGAACATAGAATGGACATCACCTGTAT 835
||| ||| | ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAACCGAATACGAAGGTTTTGCTGGAACCAATGAGAACATAGAATGGACATCACCTGTAT 830
Query 836 CTGCAGAGCTGGAATACGGAAGCCATTCTGGATCAATGCAGGTTCAAAGCGGGA--C-TC 892
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| | ||
Sbjct 831 CTGCAGAGCTCGAATACGGAAGCCATTCAGGATCAATGCAGGTTCAAAACGGGACTCATC 890
Query 893 AGTTCGGATATGGTGATGCAGCAGCTAATACCTTATTTAGAGATGAAGATGAAGATGATC 952
||||||| |||||||||||||||||| || |||||| |||||||||| | ||||||||||
Sbjct 891 AGTTCGGGTATGGTGATGCAGCAGCTGATGCCTTATATAGAGATGAAAACGAAGATGATC 950
Query 953 GCACGTCCCACATGAGTGTTTCCCTGACTTACGACGGAGAAGTAGATGAATCCGAATCAA 1012
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 951 GCACGTCCCACATGAGTGTTTCCCTGACTTACGATGGAGAGGTAGAAGAGTCCGAATCAA 1010
Query 1013 AGAGAAGGAAACTCGAAGCTTATGCAACAGAAGTGAGTGGAACAACCCGAGCTAGCCGTG 1072
||||||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||
Sbjct 1011 AGAGAAGGAAACTAGAAGCTTATGCAACAGAAACGAGTGGATCAACCAGAGCCAGCCGTG 1070
Query 1073 AGCCAAGAGTCGTGGTGCAGACCACAAGTGACATTGACATCCTCGATGATGGTTATCGCT 1132
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGCCAAGAGTTGTGGTGCAGACCACAAGTGACATTGACATCCTCGATGATGGTTATCGCT 1130
Query 1133 GGCGCAAGTATGGGCAAAAAGTCGTCAAAGGAAACCCGAATCCAAGGAGTTACTACAAAT 1192
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1131 GGCGCAAGTATGGGCAAAAAGTCGTTAAAGGAAACCCGAATCCAAGGAGCTACTATAAAT 1190
Query 1193 GCACAGCTAATGGATGTACCGTAACAAAGCATGTAGAGAGAGCCTCTGATGACTTCAAGA 1252
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1191 GCACAGCTAATGGATGTACCGTAACGAAGCATGTAGAGAGAGCCTCTGATGACTTCAAGA 1250
Query 1253 GCGTACTAACGAGTTATATAGGCAAGCACACCCACGTTGTGCCAGCAGCACGCAACAGCA 1312
|||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1251 GCGTACTAACAACTTATATAGGCAAGCACACCCACGTTGTACCAGCAGCACGCAACAGCA 1310
Query 1313 GCCATATCGGTTCAGGCAGTTCAGGGACTCTCCAAGGTGGTTTAGCGACTCAGACCCATA 1372
|||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1311 GCCACGTCGGTGCAGGCAGTTCAGGGACTCTCCAAGGCAGTTTAGCGACTCAGACCCACA 1370
Query 1373 ACCACAATGTGCACTATCCAGTGCCACACAGTAGATCTGAGGGACTGGCCACAGCCAACT 1432
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ACCACAATGTGCACTATCCAATGCCACACAGTAGATCTGAGGGACTGGCCACAGCCAACT 1430
Query 1433 CATCACTATTTGACTTCCAGTCACACCTGAGGCCTCCTACAGGTTTCTCCGCTTACATAG 1492
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1431 CATCTCTATTTGACTTCCAGTCACACCTGAGGCATCCTACAGGTTTCTCCGTTTACATAG 1490
Query 1493 GCCAATCTGAGCTTTCTGATCTTTCAATGCCTGGTCTAACTATTGGGCAAGAGAAGCTTA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GCCAATCTGAGCTTTCTGATCTTTCAATGCCTGGTCTAACTATTGGGCAAGAGAAGCTTA 1550
Query 1553 CCAGCCTGCAGGCGCCAGACATTGGTGATCCAGCTGGCCTAATGTTGCACTTAGCAGCAG 1612
|||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1551 CCAGCCTGCAGGCGCCTGACATTGGGGATCCAACTGGCCTAATGTTGCAGTTAGCAGCAC 1610
Query 1613 AGCCAAAGGTTGAAGCAGTGTCTTTACA---GGGACTTGATTTGTCACCGAGCTCATTGA 1669
|||| ||||| ||| ||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1611 AGCCGAAGGTGGAACCAGTGTCACCACAACAGGGACTTGATTTGTCAGCGAGCTCATTGA 1670
Query 1670 TATACAGAGAGATAATGAGTAGATTACCACAGATATGA 1707
||| ||||||||| |||||||||||| ||||||||||
Sbjct 1671 TATGCAGAGAGATGTTGAGTAGATTACGACAGATATGA 1708
> AT5G56270.1 | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein
2 | chr5:22779693-22783268 FORWARD LENGTH=2798
Length=2798
Score = 248 bits (134), Expect = 1e-64
Identities = 195/225 (87%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 514 TCGATTGCTAGTGGTGCACCTGCAGATGATGGATACAACTGGAGAAAATATGGACAGAAG 573
||||| ||| ||||||| |||||||| |||||||| |||||||| ||||| ||||| |||
Sbjct 1396 TCGATGGCTGGTGGTGCGCCTGCAGAGGATGGATATAACTGGAGGAAATACGGACAAAAG 1455
Query 574 CTAGTTAAAGGAAGTGAGTATCCGCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAG 633
| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1456 TTGGTCAAAGGAAGTGAGTATCCGCGAAGCTATTACAAGTGCACAAACCCGAATTGTCAG 1515
Query 634 GTCAAGAAGAAGGTTGA-ACGGTCTCGGGAAGGTCATATTATAGAGATCATATACACAGG 692
|| |||||||| ||||| | | || |||||||||| || | |||||| ||||||| |||
Sbjct 1516 GTGAAGAAGAAAGTTGAGA-GATCAAGGGAAGGTCACATCACAGAGATTATATACAAAGG 1574
Query 693 AGCTCATAATCACCCCAAACCTCCACCTAATCGCCGCTCAGGGAT 737
|||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1575 AGCTCATAATCATCTTAAACCTCCACCTAATCGCCGCTCAGGGAT 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5