BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329048
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class... 3059 0.0
AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic | c... 2254 0.0
AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 200 4e-50
AT2G02430.1 | Symbols: | pseudogene, arginyl-tRNA synthetase |... 110 6e-23
> AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class
Ic | chr4:13307977-13313109 REVERSE LENGTH=2352
Length=2352
Score = 3059 bits (1656), Expect = 0.0
Identities = 1734/1773 (98%), Gaps = 0/1773 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCTAATGAAGAGTTTACGGGAAATCTAAAACGCCAACTCGCTAAGCTCTTTGAT 60
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 157 ATGGCAGCTAATGAAGAATTTACGGGAAATCTGAAACGTCAACTCGCGAAGCTCTTTGAT 216
Query 61 GTGTCTCTAAAATTAACGGTTCCTGATGAACCTAGTGTTGAGCCCTTGGTGGCTGCCTCC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GTTTCTCTAAAATTAACGGTTCCTGATGAACCTAGTGTTGAGCCCTTGGTGGCTGCCTCC 276
Query 121 GCTCTTGGAAAATTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTCCATAATT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 277 GCTCTTGGAAAATTTGGAGATTACCAATGTAACAACGCAATGGGACTATGGTCCATAATT 336
Query 181 AAAGGAAAGGGTACTCAGTTCAAGGGTCCTCCAGCTGTTGGACAGGCCCTTGTTAAGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAAGGAAAGGGTACTCAGTTCAAGGGTCCTCCAGCTGTTGGACAGGCCCTTGTTAAGAGT 396
Query 241 CTCCCTACTTCTGAGATGGTGGAATCATGCTCTGTAGCTGGACCTGGCTTTATTAATGTT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTCCCTACTTCTGAGATGGTAGAATCATGCTCTGTAGCTGGACCTGGCTTTATTAATGTT 456
Query 301 GTACTATCAGCTAAGTGGATGGCTAAGAGTATTGAAAATATGCTCATCAATGGAGTTGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 GTACTATCAGCTAAGTGGATGGCTAAGAGTATTGAAAATATGCTCATCGATGGAGTTGAC 516
Query 361 ACATGGGCACCTACTCTTTCCGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACATGGGCACCTACTCTTTCGGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATT 576
Query 421 GCAAAAGAAATGCATGTTGGTCATCTTAGATCAACTATCATTGGTGACACGCTAGCTCGC 480
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 577 GCAAAAGAAATGCATGTTGGTCATCTAAGATCAACTATCATTGGTGACACTCTAGCTCGC 636
Query 481 ATGCTCGAGTACTCAAATGTTGAAGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACA 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATGCTCGAGTACTCACATGTTGAAGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACA 696
Query 541 CAGTTTGGCATGCTAATTGAGTACCTCTTTGAGAAATTTCCTGATACAGATAGTGTGACT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CAGTTTGGCATGCTAATTGAGTACCTCTTTGAGAAATTTCCTGATACAGATAGTGTGACC 756
Query 601 GAGACAGCAATTGGAGATCTTCAGGTGTTTTACAAGGCATCAAAACATAAATTTGATCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GAGACAGCAATTGGAGATCTTCAGGTGTTTTACAAGGCATCAAAACATAAATTTGATCTG 816
Query 661 GATGAGGACTTTAAGGAAAAAGCACAACAGGCTGTGGTCCGTTTACAGGGTGGTGATCCT 720
|| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 817 GACGAGGCCTTTAAGGAAAAAGCACAACAGGCTGTGGTCCGTCTACAGGGTGGTGATCCT 876
Query 721 GTTTACCGTAAGGCTTGGGCTAAGATCTGTGACATCAGCCGAACTGAGTTTGCCAAGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GTTTACCGTAAGGCTTGGGCTAAGATCTGTGACATCAGCCGAACTGAGTTTGCCAAGGTT 936
Query 781 TACCAACGCCTTCGAGTTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTTATATT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 937 TACCAACGCCTTCGAGTTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTCATATT 996
Query 841 GCTAAAGTAATTGAGGAATTGAATAGCAAGGGATTGGTTGAAGAAAGTGAAGGTGCTCGT 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 997 GCTAAAGTAATTGAGGAATTGAATAGCAAGGGGTTGGTTGAAGAAAGTGAAGGTGCTCGT 1056
Query 901 GTGATTTTCCTTGAAGGCTTTGACATCCCACTCATGGTTGTAAAGAGTGATGGTGGTTTT 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GTGATTTTCCTTGAAGGCTTCGACATCCCACTCATGGTTGTAAAGAGTGATGGTGGTTTT 1116
Query 961 AACTATGCCTCAACAGATCTGACTGCTCTTTGGTACCGGCTCAACGAAGAGAAAGCTGAG 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1117 AACTATGCCTCAACAGATCTGACTGCTCTTTGGTACCGGCTCAATGAAGAGAAAGCTGAG 1176
Query 1021 TGGATTATATATGTGACCGATGTTGGCCAGCAGCAGCACTTTAATATGTTCTTCAAAGCT 1080
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGGATCATATATGTGACCGATGTTGGCCAGCAGCAGCACTTTAATATGTTCTTCAAAGCT 1236
Query 1081 GCCAGAAAAGCAGGTTGGCTTCCAGACAATGATAAAACTTACCCTAGAGTTAACCATGTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCCAGAAAAGCAGGTTGGCTTCCAGACAATGATAAAACTTACCCTAGAGTTAACCATGTT 1296
Query 1141 GGTTTTGGTCTCGTCCTCGGGGAAGATGGCAAGCGATTTAGAACTCGTGCAACAGATGTA 1200
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1297 GGTTTTGGTCTCGTCCTTGGGGAAGATGGCAAGCGATTTAGAACTCGGGCAACAGATGTA 1356
Query 1201 GTCCGCCTAGTTGATTTGTTAGATGAGGCCAAGACTCGCAGTAAACTTGCCCTTATTGAG 1260
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GTCCGCCTAGTTGATTTGCTAGATGAGGCCAAGACTCGCAGTAAACTTGCCCTTATTGAG 1416
Query 1261 CGCGGCAAGGACAAAGAATGGACACCGGAGGAACTGGACCAAACAGCTGAGGCAGTTGGA 1320
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1417 CGCGGTAAGGACAAAGAATGGACACCGGAAGAACTGGACCAAACAGCTGAGGCAGTTGGA 1476
Query 1321 TATGGTGCGGTAAAGTATGCTGACCTGAAGAACAACAGATTAACAAATTATACTTTCAGC 1380
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TATGGTGCGGTCAAGTATGCTGACCTGAAGAACAACAGATTAACAAATTATACTTTCAGC 1536
Query 1381 TTTGATCAAATGCTTAATGACAAGGGAAATACAGCCGTTTACCTTCTTTACGCTCATGCT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1537 TTTGATCAAATGCTTAATGACAAGGGAAATACAGCCGTTTACCTTCTTTACGCCCATGCT 1596
Query 1441 CGGATCTGTTCAATCATCAGAAAGTCTGGCAAAGACATAGATGAGCTGAGAAAGACAGGA 1500
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1597 CGGATCTGTTCAATCATCAGAAAGTCTGGCAAAGACATAGATGAGCTGAAAAAGACAGGA 1656
Query 1501 AAACTAGCATTGGATCATGCAGATGAACGAGCACTGGGGCTTCACTTGCTTCGATTTGCT 1560
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 AAATTAGCATTGGATCATGCAGATGAACGAGCACTGGGGCTTCACTTGCTTCGATTTGCT 1716
Query 1561 GAGACGGTTGAGGAAGCTTGCACCAACTTGTTACCGAGCGTGCTGTGCGAGTACCTCTAC 1620
|||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 1717 GAGACGGTGGAGGAAGCTTGTACCAACTTATTACCGAGTGTTCTGTGCGAGTACCTCTAC 1776
Query 1621 AATTTATCTGAACACTACACCAGATTCTACTCCAATTGTCAGGTCAATGGTTCACCAGAG 1680
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AATTTATCTGAACACTTTACCAGATTCTACTCCAATTGTCAGGTCAATGGTTCACCAGAG 1836
Query 1681 GAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTTATGCGGAAATGCTTCCAC 1740
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1837 GAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAATGCTTCCAC 1896
Query 1741 CTTCTTGGAATCACTCCTGTTTACAAGATTTGA 1773
||||||||||||||||| |||||||||||||||
Sbjct 1897 CTTCTTGGAATCACTCCGGTTTACAAGATTTGA 1929
> AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic |
chr1:24818911-24822342 REVERSE LENGTH=1991
Length=1991
Score = 2254 bits (1220), Expect = 0.0
Identities = 1601/1782 (90%), Gaps = 37/1782 (2%)
Strand=Plus/Plus
Query 6 AGCTAATGAAGAGTTTACGGGAAATCTAAAACGCCAACTCGCTAAGCTCTTTGATGTGTC 65
||||| | |||| || || ||||||| || ||||||||||||||||||||| ||||||||
Sbjct 80 AGCTAGTAAAGAATTCACCGGAAATCCAAGACGCCAACTCGCTAAGCTCTTCGATGTGTC 139
Query 66 TCTAAAATTAACGGTTCCTGATGAACCTAGTGTTGAGCCCTTGGTGGCTGCCTCCGCTCT 125
|| || |||||||||||||||||||||| ||||||||||||| | | | || |
Sbjct 140 GCTTAAGTTAACGGTTCCTGATGAACCTAATGTTGAGCCCTTGAT--C-G----AGC-C- 190
Query 126 TGGAAAATTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTC-CATAATTAAAG 184
||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 191 TGGCAAATTTGGAGATTACCAATGTAACAATGCAATGGGACTATGGTCTC-TAATTAAAG 249
Query 185 GAAAGGGTACTCAGTTCAAG-GGTCCTCCAGCTGTTGGACAGGCCCTTGTTAAGAGTCTC 243
|||||||||| |||||| | |||||||| |||||||||||||| ||| || ||||||||
Sbjct 250 GAAAGGGTACGCAGTTC-CGTGGTCCTCCCGCTGTTGGACAGGCTCTTATTCAGAGTCTC 308
Query 244 CCTACTTCTGAGATGGTGGAATCATGCTCTGTAGCTGGACCTGGCTTTATTAATGTTGTA 303
|||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||
Sbjct 309 CCTACTTCTGAGATGGTGGAATCATGCTCTATAGCTGGTCCTGGATTTGTTAATGTTGTA 368
Query 304 CTATCAGCTAAGTGGATGGCTAAGAGTATTGAAAATATGCTCATCAAT-GGAGTTGACAC 362
|||||| |||||||||||||||||||||||||||||||||| | || ||| |||| ||
Sbjct 369 CTATCATCTAAGTGGATGGCTAAGAGTATTGAAAATATGCTTGTTGATGGGA-TTGATAC 427
Query 363 ATGGGCACCTACTCTTTCCGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGC 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATGGGCACCTACTCTTTCGGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGC 487
Query 423 AAAAGAAATGCATGTTGGTCATCTTAGATCAACTATCATTGGTGACACGCTAGCTCGCAT 482
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 488 TAAAGAAATGCATGTTGGTCATCTTAGATCAACTATCATTGGTGACACTCTAGCTCGCAT 547
Query 483 GCTCGAGTACTCAAATGTTGAAGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACA 542
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 548 GCTCGAGTACTCAAAGGTTGAAGTTCTTCGCAGAAACCATGTTGGTGACTGGGGAACACA 607
Query 543 GTTTGGCATGCTAATTGAGTACCTCTTTGAGAAATTTCCTGATACAGATAGTGTGACTGA 602
|||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 608 GTTTGGGATGCTAATTGAGTTTCTCTTTGAGAAATTTCCTGATACAGAGAGTGTGACCGA 667
Query 603 GACAGCAATTGGAGATCTTCAGGTGTTTTACA-AGGCATCAAAACAT-AAATTTGATCTG 660
|||||| ||||||||||||||||||||||||| || ||||||| | ||||||||| ||
Sbjct 668 GACAGCTATTGGAGATCTTCAGGTGTTTTACAGAGA-ATCAAAAT-TGAAATTTGATTTG 725
Query 661 GATGAGGACTTTAAGGAAAAAGCACAACAGGCTGTGGTCCGT-TTACAGGGTGGTGATCC 719
|| || ||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 726 AATCCTGAGTTTAAGGAAAAAGCACAACAGGCTGTGGTCCGTCTT-CAGGGTGGAGATCC 784
Query 720 TGTTTACCGTAAGGCTTGGGCTAAGATCTGTGACATCAGCCGAA-CTGAGTTTGCCAAGG 778
||||||||| |||| ||||||||||| || || |||||||||| | |||||||||||||
Sbjct 785 TGTTTACCGCCAGGCATGGGCTAAGATTTGCGAAATCAGCCGAAAC-GAGTTTGCCAAGG 843
Query 779 TTTACCAACGCCTTCGAGTTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTTATA 838
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TTTACAAACGCCTTCGAATCGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTTATA 903
Query 839 TTGCTAAAGTAATTGAGGAATTGAATAGCAAGGGATTGGTTGAAGAAAGTGAAGGTGCTC 898
| ||||| |||||||||||||||| |||||||| || |||||||||||| |||||||||
Sbjct 904 TCGCTAACGTAATTGAGGAATTGAGCAGCAAGGGGTTAGTTGAAGAAAGTAAAGGTGCTC 963
Query 899 GTGTGATTTTCCTTGAAGGCTTTGACATCCCACTCATGGTTGTAAAGAGTGATGGTGGTT 958
||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 964 GTGTGATATTCATTGAAGGCTTTAAAATCCCACTCATTGTTGTAAAGAGTGATGGTGGTT 1023
Query 959 TTAACTATGCCTCAACAGATCTGACTGCTCTTTGGTACCGGCTCAACGAAGAGAAAGCTG 1018
|||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 1024 TTAACTATGCCTCAACTGATCTAACTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTG 1083
Query 1019 AGTGGATTATATATGTGACCGATGTTGGCCAGCAGCAGCACTTTAATATGTTCTTCAAAG 1078
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 1084 AGTGGATTATATATGTGACCGACGTTGGCCAGCAGCAGCATTTTGATATGTTCTTCAAAG 1143
Query 1079 CTGCCAGAAAAGCAGGTTGGCTTCCAGACAATGATAAAACTTACCCTAGAGTTAACCATG 1138
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1144 CTGCCAGAAAAGCAGGATGGCTTCCAGACGATGATAAAACTTACCCTAGAGTTAGCCATG 1203
Query 1139 TTGGTTTTGGTCTCGTCCTCGGGGAAGATGGCAAGCGATTTAGAACTCGTGCAACAGATG 1198
||||||||||||| ||||| || || ||| |||||||||||||||||| ||| |||| |
Sbjct 1204 TTGGTTTTGGTCTTGTCCTTGGAGATGATAACAAGCGATTTAGAACTCGGGCAGCAGAGG 1263
Query 1199 TAGTCCGCCTAGTTGATTTGTTAGATGAGGCCAAG-ACTCGCAGTAAA-CTTGCCCTTAT 1256
|||||||||||| ||||||| |||||||||||||| | |||||||||| || ||||||||
Sbjct 1264 TAGTCCGCCTAGCTGATTTGCTAGATGAGGCCAAGGA-TCGCAGTAAAGCT-GCCCTTAT 1321
Query 1257 TGAGCGCGGCAAGGACAAAGAATGGACACCGGAGGAACTGGACCAAACAGCTGAGGCAGT 1316
||||||||| ||||||||||||||| |||| ||||| |||||||||| ||||||||||||
Sbjct 1322 TGAGCGCGGTAAGGACAAAGAATGGTCACCCGAGGAGCTGGACCAAATAGCTGAGGCAGT 1381
Query 1317 TGGATATGGTGCGGTAAAGTATGCTGACCTGAAGAACAACAGA-TTAACAAATTATACTT 1375
|||||||||||| | ||||||||||||||||||| ||||||| ||| | ||||||||
Sbjct 1382 TGGATATGGTGCCCTGAAGTATGCTGACCTGAAGACCAACAGAATTA-CGGGTTATACTT 1440
Query 1376 TCAGCTTTGATCAAATGCTTAATGACAAGGGAAATACAGCCGTTTACCTTCTTTACGCTC 1435
| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 1441 TTAGCTTTGATCAAATGCTTAATGACAAGGGAGATACAGCCGTTTACCTTCTCTACGCCC 1500
Query 1436 ATGCTCGGATCTGTTCAATCATCAGAAAGTCTGGCAAAGACATAGATGAGCTGAGAAAGA 1495
||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1501 ATGCTCGGATCTGCTCAATCATCAGAAAGTCTGGAAAAGACATAGATGAGCTAAAAAAGA 1560
Query 1496 CAGGAAA-ACTAGCATTGGATCATGCAGATGAACGAGCACTGGGGCTTCACTTGCTTC-G 1553
||||||| | |||| ||||||||||||| ||||| ||||| ||||||||| |||||| |
Sbjct 1561 CAGGAAAGA-TAGCGTTGGATCATGCAGCCGAACGGGCACTAGGGCTTCACCTGCTTCAG 1619
Query 1554 ATTTGCTGAGACGGTTGAGGAAGCTTGCACCA-ACTTGTTACCGAGCGTGCTGTGCGAGT 1612
|||||||||||||| |||||||| ||||||| | |||||||||| ||||| ||| |||
Sbjct 1620 -TTTGCTGAGACGGTGGAGGAAGCGTGCACCACA-TTGTTACCGAATGTGCTTTGCAAGT 1677
Query 1613 ACCTCTACAATTTATCTGAACACTACACCAGATTCTACTCCAATTGTCAGGTCAATGGTT 1672
|||| ||| | ||||| ||| | | ||||| ||| ||||||||||||||||| |||||||
Sbjct 1678 ACCTTTACTACTTATCCGAAGAGTTCACCAAATTTTACTCCAATTGTCAGGTGAATGGTT 1737
Query 1673 CA-CCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTTATGCGGAAA 1731
| || |||||||| ||||||||| ||||||| ||||||||||| ||||| |||||||||
Sbjct 1738 CGGCC-GAGGAGACGAGCCGTCTCTTACTTTGCGAAGCAACGGCTATAGTCATGCGGAAA 1796
Query 1732 TGCTTCCACCTTCTTGGAATCACTCCTGTTTACAAGATTTGA 1773
||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1797 TGCTTCCACCTTCTTGGAATCACCCCTGTTTACAAGCTTTGA 1838
> AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast
hits to 232 proteins in 41 species: Archae - 0; Bacteria
- 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2;
Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307461-13308953
FORWARD LENGTH=1366
Length=1366
Score = 200 bits (108), Expect = 4e-50
Identities = 112/114 (98%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1660 CAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 867
Query 1720 GTTATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCTGTTTACAAGATTTGA 1773
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 866 GTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCGGTTTACAAGATTTGA 813
Score = 154 bits (83), Expect = 3e-36
Identities = 102/111 (92%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 1554 ATTTGCTGAGACGGTTGAGGAAGCTTGCACCAACTTGTTACCGAGCGTGCTGTGCGAGTA 1613
|||||| ||||||| ||||||||||| |||||||| |||||||| || |||||||||||
Sbjct 1143 ATTTGC--AGACGGTGGAGGAAGCTTGTACCAACTTATTACCGAGTGTTCTGTGCGAGTA 1086
Query 1614 CCTCTACAATTTATCTGAACACTACACCAGATTCTACTCCAATTGTCAGGT 1664
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1085 CCTCTACAATTTATCTGAACACTTTACCAGATTCTACTCCAATTGTCAGGT 1035
Score = 126 bits (68), Expect = 6e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 1493 AGACAGGAAAACTAGCATTGGATCATGCAGATGAACGAGCACTGGGGCTTCACTTGCTTC 1552
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGACAGGAAAATTAGCATTGGATCATGCAGATGAACGAGCACTGGGGCTTCACTTGCTTC 1241
Query 1553 GATTTGCTGAG 1563
|||||||||||
Sbjct 1240 GATTTGCTGAG 1230
> AT2G02430.1 | Symbols: | pseudogene, arginyl-tRNA synthetase
| chr2:635456-636638 FORWARD LENGTH=1183
Length=1183
Score = 110 bits (59), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1267 AAGGACAAAGAATGGACACCGGAGGAACTGGACCAAACAGCTGAGGCAGTTGGATATGGT 1326
||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 3 AAGGACAAAGAATAGACACCAGAGGAACTGAACCAAACAGCTGAGGCAGTTGGATATGGT 62
Query 1327 GCGGTAAAGTA 1337
||||| |||||
Sbjct 63 GCGGTGAAGTA 73
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1456 ATCAGAAAGTCTGGCAAAGACATAGATGAGCTGA 1489
||||||||||||||||||||||||||||||||||
Sbjct 136 ATCAGAAAGTCTGGCAAAGACATAGATGAGCTGA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5