BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329065
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26120.1 | Symbols: | Ankyrin repeat family protein / BTB/P... 2492 0.0
> AT4G26120.1 | Symbols: | Ankyrin repeat family protein / BTB/POZ
domain-containing protein | chr4:13236448-13238487 FORWARD
LENGTH=1803
Length=1803
Score = 2492 bits (1349), Expect = 0.0
Identities = 1649/1794 (92%), Gaps = 20/1794 (1%)
Strand=Plus/Plus
Query 7 ACCACCACCGCTAGATTCTCTGATTCATCTTACGAATTTAGCAACACAAGCGGTAATAGT 66
||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 19 ACCACCACCGCTAGATTCTCTGATTCA---TACGAGTTCAGCAACACAAGCGGCAATAGC 75
Query 67 TTCTTCGCCGCCGAGTCATCTATTGATTACCCGTCGGAATTTCTCACACCACCGGAGGTA 126
||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||
Sbjct 76 TTCTTCGCCGCCGAGTCATCTCTTGATTATCCGACGGAATTTCTCACGCCACCGGAGGTA 135
Query 127 TCAGCGCTTCAGCTTTTGTCAAATTGCCTTGAGTCTGTTTTTGATTCACCGGAAAATTTC 186
||||| ||| | ||| |||| || ||||| ||||||||||| || || ||||| | |||
Sbjct 136 TCAGCTCTTAAACTTCTGTCTAACTGCCTCGAGTCTGTTTTCGACTCGCCGGAGACGTTC 195
Query 187 TACAGCGACGCTAAGCTAGTTCTCGCCGGCGGCCGGGAAGTTTCTTTCCACCGTTGTATT 246
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 196 TACAGCGATGCTAAGCTAGTTCTCGCCGGCGGCCGGGAAGTTTCTTTTCACCGTTGTATT 255
Query 247 CTCTCGGCGAGAATTCCTGTCTTCAAAAGTGCGTTAGCCACCGTGAAGGAACAAAAA--- 303
|| || ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 256 CTTTCCGCGAGAATTCCTGTCTTCAAAAGCGCTTTAGCCACCGTGAAGGAACAAAAATCC 315
Query 304 TCCACCACCGTGAAGCTCGAGATG-AAGAAGATCGCCACAGATTACGAAGTCGGCTTTGA 362
|||||||||||||||||| || || ||| ||||||||| |||||||||||||||||||||
Sbjct 316 TCCACCACCGTGAAGCTCCAGCTGAAAG-AGATCGCCAGAGATTACGAAGTCGGCTTTGA 374
Query 363 TTCGGTGGCGACGGTTTTGGCGTTTGTTTACAGCGGCAGAGTGAGG-CCGCCGCCGAAGG 421
||||| | | |||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 375 CTCGGTTGTGGCGGTTTTGGCGTATGTTTACAGCGGCAGAGTGAGGTCC-CCGCCGAAGG 433
Query 422 GAGCTTCTGATTGCGTAGACGACGATTGCTGCCACGTGGCTTGCCGGCCAAAGGTGGATT 481
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 434 GAGCTTCTGCTTGCGTAGACGACGATTGTTGCCACGTGGCTTGCCGGTCAAAGGTGGATT 493
Query 482 TCATGGTGGAGGTTCTTTATTTGGCTTTCGTTTTCCAGATTCCGGAACTAGTTACTATGT 541
|||||||||||||||||||| || |||||||||||||||||| ||| |||||||| |||
Sbjct 494 TCATGGTGGAGGTTCTTTATCTGTCTTTCGTTTTCCAGATTCAAGAATTAGTTACTCTGT 553
Query 542 ATGAGAGACAATTCTTGAAAATTGTAGACAAAGTTGTGGTCGAAGACAGCTTGGTTATAT 601
||||||| || |||||| ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 554 ATGAGAGGCAGTTCTTGGAAATTGTAGACAAAGTTGTAGTCGAAGACATCTTGGTTATAT 613
Query 602 TCAAGCTTGATACTCTATGTGGTCA-AACATACAAGAAGCTTTTGGATAGATGCATAGAG 660
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 614 TCAAGCTTGATACTCTATGTGGT-ACAACATACAAGAAGCTTTTGGATAGATGCATAGAA 672
Query 661 ATTATCGTCAAGTCTGATATAGAACTAGTTAGGCTTGAGAAGTCTTTGCCTCAACAC-TT 719
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 673 ATTATCGTGAAGTCTGATATAGAACTAGTTAGTCTTGAGAAGTCTTTACCTCAACACATT 732
Query 720 TGTCAAGCAAATCACT-GGTATCCGCAAAGCGCT-TGGTCTAGAGCCACCTGAACTACAA 777
| |||||||||||| | | |||||| ||||||| | |||||||||||||| ||||| ||
Sbjct 733 T-TCAAGCAAATCA-TAGACATCCGCGAAGCGCTCT-GTCTAGAGCCACCTAAACTAGAA 789
Query 778 AAACATGTCAAGAACTTATATAAGGCACTAGACTCTGATGATGTTGAGCTTGTCAAGATG 837
| |||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 790 AGGCATGTCAAGAACATATACAAGGCGCTAGACTCAGATGATGTTGAGCTTGTCAAGATG 849
Query 838 CTTTTGCTAGAGGGACATACCAATCTTGAT-ATGTCGTATGCTCTTCATTTTGCTATCGC 896
||||||||||| ||||| |||||||| ||| | | |||||||||||||||||||||||||
Sbjct 850 CTTTTGCTAGAAGGACACACCAATCTCGATGA-GGCGTATGCTCTTCATTTTGCTATCGC 908
Query 897 GCACTGCGATGTGAAGACCGCGTATGATCTCCTTGAGCTTGAGCTTGCGGATGTTAACCA 956
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 909 TCACTGCGCTGTGAAGACCGCGTATGATCTCCTCGAGCTTGAGCTTGCGGATGTTAACCT 968
Query 957 TAGAAATCCGAGGGGATACACTGTTCTTCATTTTGCTGCGATGCGGAAGGAGCCAAAGCT 1016
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |
Sbjct 969 TAGAAATCCGAGGGGATACACTGTGCTTCATGTTGCTGCGATGCGGAAGGAGCCGAAGTT 1028
Query 1017 GATAACATCTTTGTTAATGAAAGGGGCAAATGTATTAGATACATTATTGGATGGTAGAAC 1076
||||| ||||||||||||||||||||||||| | ||||| ||| |||||||||||||||
Sbjct 1029 GATAATATCTTTGTTAATGAAAGGGGCAAATATTTTAGACACAACATTGGATGGTAGAAC 1088
Query 1077 CGCTCTCGTGATTGCAAAACGACTCACTAAAACGGATGACTACAAAACTAGTATGGAGGA 1136
|||| | ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1089 CGCTTTAGTGATTGTAAAACGACTCACTAAAGCGGATGACTACAAAACTAGTACGGAGGA 1148
Query 1137 CGGCACACATTCTCTGAAAGGCGGATTATGCATAGAGGTACTTGAGCATGAACAAAAACT 1196
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CGGTACGCCTTCTCTGAAAGGCGGATTATGCATAGAGGTACTTGAGCATGAACAAAAACT 1208
Query 1197 AGAATATGTGTTGCCTAGAGAAGCTTCACTTTCTCTTCCAGTGACTCCCGAGGAGTTGCG 1256
||||||| ||| ||||| ||| |||||||||||||||||||| ||||| ||||||||| |
Sbjct 1209 AGAATATTTGTCGCCTATAGAGGCTTCACTTTCTCTTCCAGTAACTCCAGAGGAGTTGAG 1268
Query 1257 GATGATGTTGCTCTATTATGAAAATCGAGTTGCACTTGCTCGACTTCTCTTTCCAGTGGA 1316
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1269 GATGAGGTTGCTCTATTATGAAAACCGAGTTGCACTTGCTCGACTTCTCTTTCCAGTGGA 1328
Query 1317 ATCTGAAATTGTACAGGATATTGCCAAATTGGACGAAACATGCGAGTTTACAGCTTCTAG 1376
| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1329 AACTGAAACTGTACAGGGTATTGCCAAATTGGAGGAAACATGCGAGTTTACAGCTTCTAG 1388
Query 1377 TCTCGAGCCTGATCATCGCATTGGTGAAAAGCGGACATCACTGGACCTAAATATGGCGCC 1436
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1389 TCTCGAGCCTGATCATCACATTGGTGAAAAGCGGACATCACTAGACCTAAATATGGCGCC 1448
Query 1437 TTTCCAAATCCATGAGAAGCATTTGAGTAGACTAAGAGCAGTTTGTAAAACCGTGGAACT 1496
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1449 GTTCCAAATCCATGAGAAGCATTTGAGTAGACTAAGAGCACTTTGTAAAACCGTGGAACT 1508
Query 1497 GGGGAAACGCTACTTCAGACGTTGTTCGCTTGATCACTTTATGGACACCGAGGACTTGAA 1556
||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1509 GGGGAAACGCTACTTCAAACGATGTTCGCTTGATCACTTTATGGATACTGAGGACTTGAA 1568
Query 1557 TCATCTTGCTAGCGTAGAAGAAGACACTCCTGAGAAACGGTTACAGAAGAAGCAAAGGTA 1616
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1569 TCATCTTGCTAGCGTAGAAGAAGATACTCCTGAGAAACGGCTACAAAAGAAGCAAAGGTA 1628
Query 1617 CGTGGAACTACAAGAGACTCTGATGAAGACCTTTAGTGAGGACAAGGAGGAATTTGGAAA 1676
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1629 CATGGAACTACAAGAGACTCTGATGAAGACCTTTAGTGAGGACAAGGAGGAATGTGGAAA 1688
Query 1677 GCCTTCCACAGCGAAACCAACCTCTGCGATGAGCTCTAATAGAAAACTCTCTCACCGGCG 1736
| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1689 GTCTTCCACACCGAAACCAACCTCTGCGGTGAGGTCTAATAGAAAACTCTCTCACCGGCG 1748
Query 1737 CCTAAGAGTGGACAAACGGGATTTTTTGAAACGACCATGCGGAAATGGGGATTA 1790
||||| |||||||||||||||||||||||||||||| | ||| || ||||||||
Sbjct 1749 CCTAAAAGTGGACAAACGGGATTTTTTGAAACGACCTTACGGGAACGGGGATTA 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5