BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329070
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26070.2 | Symbols: MEK1, NMAPKK, ATMEK1, MKK1 | MAP kinase/... 1716 0.0
> AT4G26070.2 | Symbols: MEK1, NMAPKK, ATMEK1, MKK1 | MAP kinase/
ERK kinase 1 | chr4:13217681-13219933 FORWARD LENGTH=1419
Length=1419
Score = 1716 bits (929), Expect = 0.0
Identities = 1017/1061 (96%), Gaps = 0/1061 (0%)
Strand=Plus/Plus
Query 1 ATGAACAGAGGCGGCTTATGCCCTAATCCCATCTGTCTCCCTCCTCTTGAGCAATCCATC 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATGAACAGAGGAAGCTTATGCCCTAATCCCATCTGTCTCCCTCCTCTTGAGCAATCCATC 176
Query 61 TCCAAATTCTTAACACAGAGTGGAACGTTCAAGGATGGAGATCTTCGAGTGAACAAAGAT 120
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 177 TCCAAATTCTTAACACAGAGTGGAACGTTTAAAGATGGAGATCTTCGAGTGAACAAAGAT 236
Query 121 GGAATCCAGACCGTGTCTCAGTCCGAGCCAGGAGCTCCACCTCCTATTGAGCCATTGGAC 180
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 237 GGAATCCAGACCGTGTCTCTGTCCGAACCAGGAGCTCCACCTCCTATTGAGCCATTGGAC 296
Query 181 AACCAATTGAGTTTGGCAGATCTAGAAGTGATCAAAGTCATTGGCAAAGGAGGTAGTGGT 240
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 297 AACCAATTGAGTTTGGCAGATTTAGAAGTGATCAAAGTCATTGGCAAAGGAAGTAGTGGT 356
Query 241 AATGTCCAGTTGGTGAAACACAAACTCACTCAACAGTTTTTCGCTCTTAAGGTCATTCAA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AATGTCCAGTTGGTCAAACACAAACTCACTCAACAGTTTTTCGCTCTTAAGGTCATTCAA 416
Query 301 TTGAACACAGAAGAATCAACATGTAGGGCGATTTCTCAGGAGCTGAGAATAAACTTGAGC 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TTGAACACAGAAGAATCAACATGTCGGGCGATTTCTCAGGAGCTGAGAATAAACTTGAGC 476
Query 361 TCACAATGTCCATATCTAGTCTCATGTTATCAGTCTTTCTACCATAACGGTCTTGTTTCA 420
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 477 TCGCAATGTCCATATCTTGTCTCATGTTATCAATCTTTCTACCACAACGGTCTTGTTTCA 536
Query 421 ATCATATTGGAGTTCATGGATGGTGGATCCCTTGCTGACTTGTTGAAGAAAGTCGAAAAA 480
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 537 ATCATATTGGAATTCATGGATGGTGGATCCCTTGCAGACTTGTTAAAGAAAGTCGGAAAA 596
Query 481 GTTCCTGAAAACATGCTCGCTGCCATCTGCAAGCGAGTCCTTCGAGGTCTTTGCTATATT 540
||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 597 GTTCCTGAAAACATGCTATCTGCCATCTGCAAGCGAGTTCTTCGAGGTCTTTGTTATATT 656
Query 541 CACCATGAGAGGCGAATCATTCATCGGGACTTAAAGCCTTCGAACCTGCTAATCAATCAT 600
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 657 CATCATGAGAGGCGAATCATTCATCGGGACTTAAAGCCTTCAAACTTGCTAATCAATCAT 716
Query 601 AGAGGTGAAATCAAGATCACTGACTTTGGTGTTAGCAAGATCTTGACAAGCACAAGTAGT 660
||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 717 AGAGGTGAAGTCAAGATCACAGACTTTGGTGTCAGCAAGATCTTGACAAGCACAAGTAGT 776
Query 661 CTAGCTAATTCGTTCGTGGGCACATACCCCTATATGTCTCCAGAGAGAATTAGCGGGAGT 720
|| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 777 CTTGCTAATTCTTTCGTGGGCACATACCCTTATATGTCTCCAGAGAGAATCAGCGGGAGT 836
Query 721 TTGTACAGTAACAAGAGCGATATCTGGAGCTTGGGACTGGTTTTGCTCGAATGTGCAACG 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGTACAGTAACAAGAGCGATATTTGGAGCTTGGGACTGGTTTTGCTCGAATGTGCAACG 896
Query 781 GGTAAATTCCCGTATATTCCTCCAGAACACAAGAAGGGATGGAGCAGCGTGTACGAGCTT 840
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 897 GGTAAATTCCCGTATACTCCTCCAGAACACAAGAAAGGATGGAGTAGCGTGTACGAGCTT 956
Query 841 GTGGACGCCATTGTTGAAAACCCGCCTCCTTGTGCACCTTCCCATCTCTTTTCTCCAGAG 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 GTGGACGCCATTGTTGAAAACCCGCCTCCTTGTGCACCTTCCAATCTCTTTTCTCCAGAG 1016
Query 901 TTTTGCTCCTTCATCTCGCAATGTGTACAAAAAGATCCAAGGGACAGAAAATCAGCAAAT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTTTGCTCCTTCATCTCGCAATGTGTACAAAAAGATCCAAGGGACAGAAAATCAGCAAAG 1076
Query 961 GAACTTCTGGAACACAAGTTCGTAAACATGTTTGAAGATTCGGATATGAATCTCTCTGCT 1020
|| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 1077 GAGCTTCTGGAACACAAGTTCGTAAAGATGTTTGAAGATTCGGATACAAATCTCTCGGCT 1136
Query 1021 TACTTCACCGACGCAGGATCTTTGATTCCTCCACTTGCTAA 1061
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 TACTTCACCGACGCAGGATCTTTGATTCCCCCACTTGCTAA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5