BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329078
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25980.1 | Symbols: | Peroxidase superfamily protein | chr4... 1748 0.0
> AT4G25980.1 | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507
FORWARD LENGTH=1116
Length=1116
Score = 1748 bits (946), Expect = 0.0
Identities = 1062/1118 (95%), Gaps = 7/1118 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTCTCTATTCCTGTCTTAATGAAGAGACTTTGTCTGTATAA--ctctctctct- 57
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGTCTGTCTCTATTCCGGTCTTAATGAAGAGACTTTGTCTGTATAACTCTCTCTCTCTC 60
Query 58 tatctttttcacctctttccctcaccctctttcgctctctcgttctctGTTGAGTTGAAC 117
| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 61 TTTCTTTTTCACCTCTTTCCCTCACCCTCTCTGGCTCTCTCATTCTCTGTTGAGTTGAAC 120
Query 118 TTACTAAAAGCACAAATGGTGTGGGCAAAGGCTAGGATGAGACTAGCTTTGTCTCTTATT 177
|||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||| ||
Sbjct 121 TTACTAAAAGCACAAATGGTTTGGGCAAATGCTAAGATGAGGCTAGCTTTGTCTCTTGTT 180
Query 178 ACGGTTTTCCTCGGCATCTCTCTTGCTGATCTTGAAGTTGGATTTTACTCCAATACATGT 237
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 181 ACGGTTTTCTTCGGCATCTCTCTTGCTAATCTTGAAGTCGGATTTTACTCCAATACATGC 240
Query 238 CCTCAAGCCGAGTCAATCGTTAGGAGAGTTGTCT-TGGGAGCTGCTCTTTCCGACCCTAA 296
|||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||
Sbjct 241 CCTCAAGCCGAGTCAATCGTTAAGAGGGTTGTCTCAGGG-GCTGCTCTTTCCGACCCTAA 299
Query 297 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGG 359
Query 357 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGGCATGAAGGCGT 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGACATGAAGGCGT 419
Query 417 TAGAGGATTTGAGATTGTAGAAGCTGCCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 476
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 420 TAGAGGATTTGAGATAGTAGAAGCCGTCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGT 479
Query 477 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCAAATGG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCGAATGG 539
Query 537 ACCGGCATATGAGGTGCCAACTGGGCGGAGAGATGGTCGTGTTTCGAACATATCATTGGC 596
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 540 ACCGGCGTATGAGGTGCCAACTGGGCGGAGAGATGGTCGGGTTTCGAACATGTCATTGGC 599
Query 597 TAAGGACATGCCGGAGGTGAGTGACTCGATTCAGATACTAAAGGATAAGTTTATGCAGAA 656
||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 600 TAAGGACATGCCGGAGGTGAGTGACTCGATTGAGATACTAAAGGCTAAGTTCATGCAGAA 659
Query 657 GGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATTGGAACAACGGC 716
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 AGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATCGGAACAACGGC 719
Query 717 CTGCTTCTTCATGTCCAAACGGCTCTACGATTTCTTACCCGGTGGTCAACCTGATCCGAC 776
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 720 CTGCTTCTTCATGTCCAAACGGCTCTATGATTTCTTACCTGGTGGCCAACCTGACCCGAC 779
Query 777 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAA 839
Query 837 CGTCCGGTTACCAATTGACCGGTTCAGTGAACGGCTATTCGACAAGCAGATTCTGCACAA 896
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 840 CGTCCGTTTACCAATTGACCGGTTCAGCGAACGGCTATTCGACAAGCAGATTCTGCAAAA 899
Query 897 CATAAAGGATGGTTTCGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTTATAAC 956
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 900 CATAAAGGATGGTTTTGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTAACGAC 959
Query 957 TC-GACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACGTTTG 1015
| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 960 -CAGACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACATTCG 1018
Query 1016 AGTCCGATTTCGTAAAGGCAATAGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1075
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGTCTGATTTCGTTAAGGCGATCGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCA 1078
Query 1076 AGGGGGAAATTCGACGGGTTTGCTCGGCCTTCAATTGA 1113
| ||||| ||||||||||||||||||||||||||||||
Sbjct 1079 AAGGGGAGATTCGACGGGTTTGCTCGGCCTTCAATTGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5