BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329088
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25850.1 | Symbols: ORP4B | OSBP(oxysterol binding protein)-... 1801 0.0
AT4G25860.1 | Symbols: ORP4A | OSBP(oxysterol binding protein)-... 1652 0.0
> AT4G25850.1 | Symbols: ORP4B | OSBP(oxysterol binding protein)-related
protein 4B | chr4:13143648-13146930 FORWARD LENGTH=1639
Length=1639
Score = 1801 bits (975), Expect = 0.0
Identities = 1120/1191 (94%), Gaps = 6/1191 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCATTGGAAGATGAAAAAGATTCTGAG 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGTTGGAAGATGAAAAAGATTCTGAA 286
Query 61 CACACAGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTCAAGACCGTACGTCCAGGA 120
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 287 CACACTGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAGGA 346
Query 121 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 406
Query 181 TGTTACGGCGAGATGGTCTACAGCTTCGGCGGTCAGGATCTGCTTGGGGAATGCAACCGC 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 407 TGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCCGC 466
Query 241 CGTGATCTTCCCATTGAACGGTTTAAATCGGTGGTGACGTGGAATATATCCACACTCCGT 300
||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||
Sbjct 467 CGTGATCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTCCGT 526
Query 301 CCGCTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACACACCACGTCTCC 360
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 527 CCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTATCG 586
Query 361 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTGTCCGCACTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 587 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGCTCTT 646
Query 421 CATGCGACTCACGAACAAGAAAATATCGATGTGACATGGTGTCAATATTTCACTCCTAAA 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 647 CATGCGACTCACGAACAAGAAAATATCGACGTGACATGGTGTCAATATTTCACTCCTAAA 706
Query 481 TTTCGTGGTACTTACGTGGACGTTGAGGTAAAGGGTAAAAGAGTAATGAAGCTTCTGAAT 540
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 707 TTTCGTGGTACTCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTTCTGAAT 766
Query 541 CGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATCATGAGATTCTTACCGGCGCCG 600
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 767 CATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCGGCGCCG 826
Query 601 GGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTAATCTCGAAGCTGAG 660
|||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 827 GGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAAGCTGAG 886
Query 661 TTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAACAACAGATCACTT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 887 TTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGATCAATA 946
Query 721 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGCCATTGG 780
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 947 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGCCATTGG 1006
Query 781 GACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTACAATGCC 840
||||||||||||||||| |||||| | |||||||||||| ||||||| || |||||||||
Sbjct 1007 GACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTACAATGCC 1066
Query 841 AAGGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAGGTAATGGAG 900
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||
Sbjct 1067 AAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTAACGGAG 1126
Query 901 AGCGAGTCAACGATGGTGTGGAGTGAAGTAAGTGA-GCGTATACTGAAGAAAGATTGGGA 959
|||||||| || ||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1127 AGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGATTGGGA 1185
Query 960 Aagagcaagagaagctaagatacttgtggaggagaagcagagagaggctctgaaacagag 1019
|||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||
Sbjct 1186 AAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAAACAGAG 1245
Query 1020 agagaCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAATA-AGGGTAAAG 1078
|||| ||||||||||||||||||||||||||||||||| ||||||||| | | |||||||
Sbjct 1246 AGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAA-AGACGGTAAAG 1304
Query 1079 ACTGGGACTGCTCACCGCTACAGCCCACGGTTCCTCCGGGGCCACTCGTAATCACAGAGG 1138
||||||| || |||||||||||||| ||||||||||||| ||||||||| |||||| |||
Sbjct 1305 ACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCACATAGG 1364
Query 1139 CGCAAGGA-GAAATCATAAACCGGTTTCAAGATTCCAACACTCTATGTTGA 1188
||||||| ||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1365 AGCAAGGACGAA-TCATTCACCGGTTTCAAGATTCCAAAACTCTATGTTGA 1414
> AT4G25860.1 | Symbols: ORP4A | OSBP(oxysterol binding protein)-related
protein 4A | chr4:13147326-13149606 FORWARD LENGTH=1271
Length=1271
Score = 1652 bits (894), Expect = 0.0
Identities = 1068/1149 (93%), Gaps = 24/1149 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCAT-TGGAAGATGAAAAAGATTCTGA 59
||||||| ||| ||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 50 ATGAGAAGGCAACTTGTGCTGGCCAAACCTTTTTC-TCTGGAAGATGAGAAAGATTCTGA 108
Query 60 GCACACAGCTTCGAA-TGTCATCCGCAAGATCCTCAGCCTC-TTCAAGACCGTACGTCCA 117
|| ||||||||| || ||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 109 GCTCACAGCTTC-AAGTGTCATCCGCAAGATCCTCAGTCTCATT-AAGACCGTACGTCCA 166
Query 118 GGATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTC 177
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 167 GGATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTC 226
Query 178 CAATGTTACGGCGAGATGGTCTACAGCTTCGGCGGTCAGGATCTGCTTGGG-GAATGCAA 236
|||||||| || |||||| ||||||||||||||||||||||||| | |||| |||||||
Sbjct 227 CAATGTTATGGGGAGATGATCTACAGCTTCGGCGGTCAGGATCTAC-TGGGCGAATGCAG 285
Query 237 CCGCCGTGATC-TTCCCATTGAACGGTTTAAATCGGTGGTGACGTGGAATATATCCACAC 295
||||||| | | ||||||| |||||| | |||||||||||||||||||| || |||||||
Sbjct 286 CCGCCGT-AACATTCCCATCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACAC 344
Query 296 TCCGT-CCGCTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACACACCAC 354
||||| ||| ||||| |||||||||||||||||||| || ||||||||||||| || |||
Sbjct 345 TCCGTCCCG-TGGTCGTTGGCATGTCTCCGTACAACCCCATTCTCGGCGAGACTCATCAC 403
Query 355 GTCTCCAACGGTC-ACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTGTC 413
||||||||||| | ||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 404 GTCTCCAACGG-CTACATCAACGTCCTCACCGAACAAGTAATGCATCATCCTCCGGTGTC 462
Query 414 CGCACTTCATGCGACTCACGAACAAGAAAATATCGATGTGACATGGTGTCAATATTTCAC 473
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 463 CGCACTTCATGCGACTCACGAACAAGAAAATATCGACGTCACATGGTGTCAATATTTCAC 522
Query 474 TCCTAAATTTCGTGGTACTTACGTGGACGTTGAGGTAAAGGGTAAAA-GAGTAATGAAGC 532
||| |||||||||||| | |||||||| ||||||||||| ||||||| || |||||||||
Sbjct 523 TCCCAAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGA-TAATGAAGC 581
Query 533 TTCTGAATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATCATGAGATTCTTAC 592
||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 582 TTCTGCATCATAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAAATTCTTAC 641
Query 593 CGGCGCCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTAATCTCG 652
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 642 CGGCGCCGGGAGCTCATTGGGCCGGAAAAGTCAAGATAAAGTGTCCTGAGACTGATCTCG 701
Query 653 AAGCTGAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAACAACA 712
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 702 AAGCTGAGTTACATTTGATCTCCGACTCATTCATTGAAAGATTCAGAGGCAACAACAACA 761
Query 713 GATCACTTAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATG 772
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 762 GATCAATCAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATCTTTG 821
Query 773 GCCATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGG-TCGAGGTTATC 831
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 822 GCCATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTG-GGCTCGAGGTTATC 880
Query 832 TACAATGCCAAGGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAG 891
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TACAATGCCAATGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAG 940
Query 892 GTAATGGAGAGCGAGTCAACGATGGTGTGGAGTGAAGTAAGTG-AGCGTATACTGAAGAA 950
||||||||||||||||| || || ||||||||||||||||||| || | |||||||||||
Sbjct 941 GTAATGGAGAGCGAGTCGACAATAGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAA 999
Query 951 AGATTGGGAAagagcaagagaagctaagatacttgtggaggagaagcagagagaggctct 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AGATTGGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCT 1059
Query 1011 gaaacagagagagaCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAATA- 1069
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1060 GAAACAGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTAGTCAA-AG 1118
Query 1070 AGGGTAAAGACTGGGACTGCTCACCGCTACAGCCCACGGTTCCTCCGGGG-CCACTCGTA 1128
| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1119 ACGGTAAAGACTGGCACTGCTCACCGCTACAGCCCACGGTTCCTC-GGGCTCCACTCGTC 1177
Query 1129 ATCACAGAG 1137
|||||||||
Sbjct 1178 ATCACAGAG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5