BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329091
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25820.1 | Symbols: XTR9, XTH14, ATXTH14 | xyloglucan endotr... 1155 0.0
> AT4G25820.1 | Symbols: XTR9, XTH14, ATXTH14 | xyloglucan endotransglucosylase/hydrolase
14 | chr4:13130297-13131788 FORWARD
LENGTH=1089
Length=1089
Score = 1155 bits (625), Expect = 0.0
Identities = 787/864 (91%), Gaps = 16/864 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTCGCCATTGGCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 53 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTTGCCATTGGCTTC 112
Query 61 TTTGTGGTGGCTGCATCCGCCGGAAGCTTCTACGAGAGCTTTGATATCACTTGGGGCAAT 120
||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 113 TTTGTGGTGGCTGCATCTGCCGGAAACTTCTATGAGAGCTTTGATATCACTTGGGGTAAT 172
Query 121 GGTCGTGCTAATATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGATCTCT 180
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 173 GGTCGTGCCAACATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGGTCTCC 232
Query 181 GGCTCCGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAGGCTCAAG 240
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 233 GGCTCAGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAAGCTCAAG 292
Query 241 CTTGTCAAGGGAAACTCCGCTGGTACTGTCACCGCATACTACCTTTCATCCAAAGG-AGC 299
|||||| |||||||| ||||| || |||||||| |||||||| || || ||||| | |
Sbjct 293 CTTGTCGCTGGAAACTCTGCTGGCACCGTCACCGCCTACTACCTATCGTCAAAAGGCA-C 351
Query 300 GACATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCTCACAGGACAGCCTTACACTAT 359
| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 352 GGCATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCGCACAGGACATCCTTACACTAT 411
Query 360 CCACACCAATGTCTTCACTGGAGGTAAAGGTGACCGCGAGATGCAGTTCCATCTCTGGTT 419
|||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 412 CCACACCAATGTGTTCACCGGAGGTAAAGGCGACCGTGAGATGCAGTTCCGTCTCTGGTT 471
Query 420 CGATCCCACCGCGGATTTCCACACCTACACCGTCCACTGGAACCCTCTTAACATCATCTT 479
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 472 CGATCCCACTGCGGATTTCCACACCTACACCGTCCACTGGAACCCTGTTAACATCATCTT 531
Query 480 CCTTGTGGATGGTATTCCAATTCGGGTATTCAAGAACTACGAGAAATATGGGGTGGCTTA 539
|||||||||||| || ||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 532 CCTTGTGGATGGGATCCCAATTCGGGTGTTCAAGAACAACGAGAAAAATGGGGTGGCTTA 591
Query 540 CCCTAAGAACCAGCCGATGCAA-ATATACTCAAGTCTTTGGGAAGCCGATGACTGGGCGA 598
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 592 CCCTAAGAACCAGCCGATG-AGGATATACTCAAGCCTTTGGGAAGCCGATGACTGGGCTA 650
Query 599 CACAAGGCGGTCGTGTGAAGATTGACTGGAGCAACGCACCATTCA-GCGCCTCCTACAGA 657
|| |||||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||
Sbjct 651 CAGAAGGCGGTCGCGTGAAGATCGACTGGAGCAACGCACCATTCAAG-GCCTCTTACAGA 709
Query 658 GACTTCAACGACCAAAGCTCATGCAGCAGGACATCGAACCT-AACATGGGTGACTTGCGA 716
|||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 710 AACTTCAACGACCAAAGCTCATGCAGCAGGACATC-AAGCTCAAAATGGGTGACTTGCGA 768
Query 717 CCCAAACAACAACTCATGGATGTGGACCTCTCTCAGTGACC-GCC-AGTACGGACAGATG 774
||||||| |||||| ||||||||||| |||||| | || ||| |||||||| | |||
Sbjct 769 GCCAAACAGCAACTCGTGGATGTGGACGACTCTCAAT--CCTGCCCAGTACGGAAAAATG 826
Query 775 AAGTGGGTGCAA-GACGA-TTACATGATCTACAACTATTGTACTGATTATAAGAGGTTCC 832
| |||||||||| || || || ||||||||||||||||||||| |||| |||||| ||||
Sbjct 827 ATGTGGGTGCAACGA-GACTT-CATGATCTACAACTATTGTACCGATTTTAAGAGATTCC 884
Query 833 CTCAGGGTCTCCCCAAGGAATGTA 856
|||| || ||||||||||| ||||
Sbjct 885 CTCAAGGCCTCCCCAAGGAGTGTA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5