BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329091 Length=870 Score E Sequences producing significant alignments: (Bits) Value AT4G25820.1 | Symbols: XTR9, XTH14, ATXTH14 | xyloglucan endotr... 1155 0.0 > AT4G25820.1 | Symbols: XTR9, XTH14, ATXTH14 | xyloglucan endotransglucosylase/hydrolase 14 | chr4:13130297-13131788 FORWARD LENGTH=1089 Length=1089 Score = 1155 bits (625), Expect = 0.0 Identities = 787/864 (91%), Gaps = 16/864 (2%) Strand=Plus/Plus Query 1 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTCGCCATTGGCTTC 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 53 ATGGCGTGTTTCGCAACCAAACAGCCTCTGTTGTTGTCTCTCCTCCTTGCCATTGGCTTC 112 Query 61 TTTGTGGTGGCTGCATCCGCCGGAAGCTTCTACGAGAGCTTTGATATCACTTGGGGCAAT 120 ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||| Sbjct 113 TTTGTGGTGGCTGCATCTGCCGGAAACTTCTATGAGAGCTTTGATATCACTTGGGGTAAT 172 Query 121 GGTCGTGCTAATATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGATCTCT 180 |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 173 GGTCGTGCCAACATATTCGAGAATGGACAGCTTCTCACTTGTACTCTTGACAAGGTCTCC 232 Query 181 GGCTCCGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAGGCTCAAG 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 233 GGCTCAGGTTTTCAATCCAAGAAGGAGTACTTGTTTGGTAAGATCGACATGAAGCTCAAG 292 Query 241 CTTGTCAAGGGAAACTCCGCTGGTACTGTCACCGCATACTACCTTTCATCCAAAGG-AGC 299 |||||| |||||||| ||||| || |||||||| |||||||| || || ||||| | | Sbjct 293 CTTGTCGCTGGAAACTCTGCTGGCACCGTCACCGCCTACTACCTATCGTCAAAAGGCA-C 351 Query 300 GACATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCTCACAGGACAGCCTTACACTAT 359 | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 352 GGCATGGGATGAGATTGACTTCGAGTTTTTGGGAAATCGCACAGGACATCCTTACACTAT 411 Query 360 CCACACCAATGTCTTCACTGGAGGTAAAGGTGACCGCGAGATGCAGTTCCATCTCTGGTT 419 |||||||||||| ||||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 412 CCACACCAATGTGTTCACCGGAGGTAAAGGCGACCGTGAGATGCAGTTCCGTCTCTGGTT 471 Query 420 CGATCCCACCGCGGATTTCCACACCTACACCGTCCACTGGAACCCTCTTAACATCATCTT 479 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 472 CGATCCCACTGCGGATTTCCACACCTACACCGTCCACTGGAACCCTGTTAACATCATCTT 531 Query 480 CCTTGTGGATGGTATTCCAATTCGGGTATTCAAGAACTACGAGAAATATGGGGTGGCTTA 539 |||||||||||| || ||||||||||| ||||||||| |||||||| ||||||||||||| Sbjct 532 CCTTGTGGATGGGATCCCAATTCGGGTGTTCAAGAACAACGAGAAAAATGGGGTGGCTTA 591 Query 540 CCCTAAGAACCAGCCGATGCAA-ATATACTCAAGTCTTTGGGAAGCCGATGACTGGGCGA 598 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| | Sbjct 592 CCCTAAGAACCAGCCGATG-AGGATATACTCAAGCCTTTGGGAAGCCGATGACTGGGCTA 650 Query 599 CACAAGGCGGTCGTGTGAAGATTGACTGGAGCAACGCACCATTCA-GCGCCTCCTACAGA 657 || |||||||||| |||||||| |||||||||||||||||||||| | ||||| |||||| Sbjct 651 CAGAAGGCGGTCGCGTGAAGATCGACTGGAGCAACGCACCATTCAAG-GCCTCTTACAGA 709 Query 658 GACTTCAACGACCAAAGCTCATGCAGCAGGACATCGAACCT-AACATGGGTGACTTGCGA 716 |||||||||||||||||||||||||||||||||| || || || ||||||||||||||| Sbjct 710 AACTTCAACGACCAAAGCTCATGCAGCAGGACATC-AAGCTCAAAATGGGTGACTTGCGA 768 Query 717 CCCAAACAACAACTCATGGATGTGGACCTCTCTCAGTGACC-GCC-AGTACGGACAGATG 774 ||||||| |||||| ||||||||||| |||||| | || ||| |||||||| | ||| Sbjct 769 GCCAAACAGCAACTCGTGGATGTGGACGACTCTCAAT--CCTGCCCAGTACGGAAAAATG 826 Query 775 AAGTGGGTGCAA-GACGA-TTACATGATCTACAACTATTGTACTGATTATAAGAGGTTCC 832 | |||||||||| || || || ||||||||||||||||||||| |||| |||||| |||| Sbjct 827 ATGTGGGTGCAACGA-GACTT-CATGATCTACAACTATTGTACCGATTTTAAGAGATTCC 884 Query 833 CTCAGGGTCTCCCCAAGGAATGTA 856 |||| || ||||||||||| |||| Sbjct 885 CTCAAGGCCTCCCCAAGGAGTGTA 908 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42447854215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5