BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329104
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52530.1 | Symbols: | dentin sialophosphoprotein-related | ... 351 1e-95
> AT5G52530.1 | Symbols: | dentin sialophosphoprotein-related
| chr5:21317140-21321236 FORWARD LENGTH=3254
Length=3254
Score = 351 bits (190), Expect = 1e-95
Identities = 974/1329 (73%), Gaps = 148/1329 (11%)
Strand=Plus/Plus
Query 49 CTTCCTTGGAAAGTGGTGGCTACAAAAGGTAGCAGGAGTTCGACAAGGCG-GACTAAGAA 107
|||||||||||| ||||||| ||||||||||| ||||| |||||||| | | |||||
Sbjct 450 CTTCCTTGGAAACCGGTGGCT---AAAGGTAGCAGAAGTTCAACAAGGCGTGGC-AAGAA 505
Query 108 ACAAATTGCACTAGCTGCAGCCCCAGATATTGAGGCAGATTG-TAAGACTTCAGCAGGTA 166
|| | || || || |||||| ||||||||||| |||| | |||| |||| || |
Sbjct 506 ACTAGTTAAACGAGTTGCAGCTTCAGATATTGAGTCAGA-AGACAAGAGTTCAACA--CA 562
Query 167 C-CGC-AGCAGAAGGAGATTCAGAATCG-GAAAAGCTTGGCGTTTCTGTTCTGGGCCAGC 223
| | | || || |||||| ||| || || ||||||||||||||||||||| || ||||
Sbjct 563 CACACTAGTAGCAGGAGAATCA-AAGCGTCCAAAGCTTGGCGTTTCTGTTCTAGGTCAGC 621
Query 224 ATTTTGCAGAAAGAGTAGAGCATGTTCCAATAAAGAAACGGAGATTTATGG-T---TC-C 278
|||| | |||||||||||||||||||| || |||||||||| |||| ||| | || |
Sbjct 622 ATTTCGTTGAAAGAGTAGAGCATGTTCCGATTAAGAAACGGATATTTGTGGTTAGCTCTC 681
Query 279 C-TCTCCATCACC-T--T--T-GAATAAGTCATCTGCTCGTGGTGAAGGCTCAAAACAT- 330
| || |||||||| | | | || | ||||||||||| ||||||||||| |||||
Sbjct 682 CATCACCATCACCATCATCATCAAAGAGGTCATCTGCTCAACGTGAAGGCTCAGAACATA 741
Query 331 CGTTTAGAGACCAACCATGCTCTGCCTGTTTCGATTTTGAACCCTAATTTAATGGGACGG 390
| | ||| |||||||| | | |||||||||| || |||||||| || | ||
Sbjct 742 AG-GCACAGATCAACCATGTTTTACCTGTTTCGAGATTAAACCCTAA-TT--T-----GG 792
Query 391 AAAACAGCAGAAGTCTC-TGATGATAAA-CCCGATTGCAGCAG-TCATGACTTCTCTGGT 447
| |||| ||| | |||||| ||| || |||| ||| | ||||||||| ||||||
Sbjct 793 ---TC-TCAGACGTC-CGTGATGA-AAAGCCTGATTACAG-TGTTCATGACTTTTCTGGT 845
Query 448 ATTAAGATACTTGCAGAAGTTGCTTGCAGTAGTGGTATGATTAGTGATATTGCATCC-GC 506
|| ||||||||||| || | ||||||||||| || | ||| || |||| ||||| || ||
Sbjct 846 ATCAAGATACTTGCTGATGCTGCTTGCAGTACTGATGTGAGTAATGATTTTGCA-CCAGC 904
Query 507 AGCAGACAGTCAGCCTG-T--TGAA-CT--TGTTCAGC-AGCAAGATGCTTTGACCTTAT 559
| |||| ||| ||||| | ||| | |||||||| | |||||| | | ||| |||
Sbjct 905 TGTAGACCGTCTGCCTGCTGAAGAATTTGCTGTTCAGCTA-CAAGATACCTCAACCATAT 963
Query 560 CTACTCATGTGGAAGGTAATGATTCATCAACTGGCATTGTC-GATGTCTCTGAGAAAGAT 618
| |||||||| |||||||| ||||||||| |||| | || | |||||||| | ||
Sbjct 964 CAACTCATGTTGAAGGTAACGATTCATCAGCTGGAACTG-CTGATGTCTC---G---CAT 1016
Query 619 ACTACAATTGAATCCAGTGA-CAAG-GTTGGGGAA-GACAAGAGCGAA-ATCATAGTGCC 674
||| | |||| ||| |||| | || | ||| || || |||||| || || ||| |||
Sbjct 1017 ACTGCGGTTGATTCCGGTGATC-AGAG-TGGCCAAGGA-AAGAGC-AATATTGTAGCGCC 1072
Query 675 TCTA-AAA-GT--TCTGAATGATACTTCGGGTAATGCTTTGGCT-ACTGATCAGAGTGAA 729
|| | ||| | ||| || | | || | | |||| |||||| | ||| ||||||| |
Sbjct 1073 TC-AGAAACATCCTCT-AA-CA-AATTTGTGCAATGAGTTGGCTGA-TGAGCAGAGTGTA 1127
Query 730 GAACATAGTATAGTTGCATCT--AGTGGTTTGATAGTGGCTCAGAACATCAGCATTGCTG 787
|| || || | ||| | ||| || || || |||| || | || | | ||||||||
Sbjct 1128 GAGCACAGCAGAGTAACCTCTGGAG-GGATT-ATAGCACCTAAAAAAACCTGCATTGCTC 1185
Query 788 TTTCAAATGAATCCTCAACAGAAGGGCCAAAGGA-AAT-TAAGGAAGCTGGTGATAGCGG 845
||||||||||||||||||||||| | |||||||| ||| | | ||||| |||| || |
Sbjct 1186 TTTCAAATGAATCCTCAACAGAAAGACCAAAGGATAATGT-A-GAAGCAAGTGAAAG-TG 1242
Query 846 AA-ATTTAGCACCTCATAAT-GAGACTGTCACTATGTCAGAGAAATTATCTGGTGATGAG 903
|| |||||||||| ||| | ||| |||| || |||||||||||||||| | ||||||
Sbjct 1243 AACCTTTAGCACCTGATAGTGGAG-CTGTAACGGTGTCAGAGAAATTATCAGCCGATGAG 1301
Query 904 CGC-ACTGGAATGGGTAAGAGCACTGAATGTCTTACAGATGATAGGTTACTCTGGGATTT 962
| | ||| ||| || | || |||| | |||| ||||| || || |||||||||||
Sbjct 1302 C-CAACT-GAA-----AAAAACAATGAAGGCCTTAAAGATGTTAAATTTCTCTGGGATTT 1354
Query 963 AAATCTTCCAACCGATGCGTGGGGTCAACCTGGTGATGTAGTTGATGAAGTATCCCGAAG 1022
||| | | | | ||| ||||||||| ||||||| || |||||
Sbjct 1355 AAA---T-------A----T----T---CCTTGTGATGTAGAAGATGAAGCGTCTCGAAG 1393
Query 1023 ATATTCTGATAGAGAAGTCACTGAGTC---TG---TTACAGAGAATGGACATGTTGATGG 1076
| || || ||||| |||| ||||| || || || || | || | |||||||
Sbjct 1394 AGATGAAGAGGGAGAAATCACAGAGTCTATTGCCCCTAAAGGGAGCGAACCTTTTGATGG 1453
Query 1077 TAGTAAGGACTA-TGCGGCTGGCCTGATTGCATCAGATTTGCAGAC-GAATTCTCCATCC 1134
||||| || | | || ||| | |||||||||||| || || |||| | ||||
Sbjct 1454 AAGTAAACAC-AGTATGGATGGGGTAATTGCATCAGATGAACATACAAAATT-TTCATCA 1511
Query 1135 CCGTCTGGGCCCAAGGCTGAAGCCTCTGC-CCGAAATGGGAAGGAGTGCCAATCTGGTTA 1193
|| ||| ||| || | |||||| |||| | ||||| ||||| ||||||||||||||
Sbjct 1512 CCATCTAAGCCTAATGATGAAGCAGCTGCTAC-AAATGACAAGGATTGCCAATCTGGTTA 1570
Query 1194 TGATTCCCAGTTTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGAGGG 1253
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 TGACTCCCAGTTTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGA--- 1627
Query 1254 CGACAGTGGAGATGTTGAACAAGT-GGATTATGGGTCTGAGCCAGAGAATGAGCGATTCT 1312
| | || |||||||| || |||||| || |||||||||||| ||||| ||||||
Sbjct 1628 --A--G---AG--GTTGAACA-GTTGGATTACGGTTCTGAGCCAGAGGATGAGAGATTCT 1677
Query 1313 ACTCTTTGG 1321
||||| |||
Sbjct 1678 ACTCTATGG 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121755170661
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5