BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329150
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25150.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1242 0.0
AT5G51260.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 542 2e-153
> AT4G25150.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:12901534-12903125 REVERSE LENGTH=1228
Length=1228
Score = 1242 bits (672), Expect = 0.0
Identities = 748/785 (95%), Gaps = 4/785 (1%)
Strand=Plus/Plus
Query 1 ATGCGGATTTTCGTGAATCTCCTTCTCTTCTCCTTG-TGTCCTCTCGCGTTCTCGAATGA 59
||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |||||
Sbjct 244 ATGCGGATTCTCGTGAATCTCATTCTCTTCTCCTTGAT-TCCTCTGGCGTTCTCCAATGA 302
Query 60 AAACTCCAGCTCGTATCTCATTTCGCGACCATTGATCTTCGAGACCCAGCTCAAGAACAT 119
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 303 AAACTCCAGCTCGTATCTCATTGCGCGACCATTGATCTTCGAAACCCAGCTCAAGAACAT 362
Query 120 GGACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 422
Query 180 CGCTCCATGGAAAACCATTCCAGCTGAGTGCGCCGATTACGTTTATCATTACCTGATGGG 239
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 423 CGCTCCATGGAAAACCATTCCAGCTGAATGCGCCGATTACGTGAAAGATTACCTGATGGG 482
Query 240 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAGGCTAAGCTTTACGCGAGCAG 299
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 483 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGTTTACGCGAGCAG 542
Query 300 CTTCCAATCTAACGCTGACGGGAAAGATATCTGGATTTTCGATATTGATGAGACGCTT-T 358
|||| ||||||||| |||||||||||| || |||||||||||||||||||||||| || |
Sbjct 543 CTTCGAATCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACG-TTAT 601
Query 359 TGTCGAATCTTCCTTATTATATGGAACACGGTTGTGGGCTGGAAGTTTTTGATCATTCCA 418
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 602 TGTCGAATCTTCCTTATTACATGGAACACGGTTGTGGGTTGGAAGTTTTTGATCATTCAA 661
Query 419 AGTTTGATAAGTGGGTGGAGAAAGGGATAGCACCTGCCATAGCACCAAGCTTGAAGCTTT 478
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 662 AGTTTGATATGTGGGTAGAGAAAGGGATAGCACCTGCTATAGCACCAAGCTTGAAGCTTT 721
Query 479 ACCAAAAGGTTATAGATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACCAAAAGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 781
Query 539 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 841
Query 599 TTCTGAGATCGTTGGATGAGCAGAACAAAACAGCGACCATATACAAGTCAGAGAAGAGGG 658
||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |
Sbjct 842 TTCTGAGATCGTTGGATGATCGGAACAAAACAGCGACCATGTACAAGTCAGAGAAGAGAG 901
Query 659 AGGAGATGGTGAAAGAAGGGTTTAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 718
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 961
Query 719 TATTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCCATGTATTATATCC 778
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 962 TGTTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCAATGTATTATATCC 1021
Query 779 CCTGA 783
|||||
Sbjct 1022 CCTGA 1026
> AT5G51260.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr5:20832025-20833782 REVERSE LENGTH=1287
Length=1287
Score = 542 bits (293), Expect = 2e-153
Identities = 549/670 (82%), Gaps = 28/670 (4%)
Strand=Plus/Plus
Query 128 ATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCTCGCTCCAT 187
|||||||| | ||||| |||| |||||||||||||||||||| ||||||||||| || |
Sbjct 435 ATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGT 494
Query 188 GGAAAACCATTCCAGCT-GAGTGCGCCGATTACGTTTATCATTACCTGATGGGTGAAGGT 246
|||||| || ||| | | || || ||||||||||| | | || |||||||| ||||
Sbjct 495 GGAAAA-CAATCCCGGTGGAATGTGCCGATTACGTGAAGGACTATGTGATGGGTAAAGGC 553
Query 247 TACGTCGTCGATGTGGAGAGAGTCTCCGAAGAGGCTAAGCT-TTACGCGAGCAGCTTCCA 305
||| || |||| ||||||||||||| ||||| ||| | | || |||||| ||| || |
Sbjct 554 TACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTT-CGCGAGAAGCATCGA 612
Query 306 A-TCTAAC-GCTGACGGGAAAGATATCTGGATTTTCGATATTGATGAGACGCTTTTGTCG 363
| ||| | || || || |||||||| |||||||||||||| |||||||| || || ||
Sbjct 613 ATTCT-CCGGC-GATGGCAAAGATATTTGGATTTTCGATATCGATGAGACTCTCTTATCC 670
Query 364 AATCTTCCTTATTATATGGAACACGGTTGTGGGCTGGAAG-TTTTTGATCATTCCAAGTT 422
|||||||||||||| || || || |||| |||| ||| || ||||||||||||| ||||
Sbjct 671 AATCTTCCTTATTACATTGATCATGGTTTTGGGTTGG-AGCTTTTTGATCATTCGGAGTT 729
Query 423 TGATAAGTGGGTGGAGAAAGGGA-TAGCACCTGCCATAGCACCAAGCTTGAAGCTTTACC 481
|||||||||||| |||| | ||| | ||||| ||||||||||||||||||||||||||||
Sbjct 730 TGATAAGTGGGTAGAGAGA-GGAGTGGCACCAGCCATAGCACCAAGCTTGAAGCTTTACC 788
Query 482 AAA-AG-GTTATAGATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACCA 539
||| || |||| |||||||| ||||||||| |||||||||||||| | | ||||| ||
Sbjct 789 AAAGAGTGTTA--GATTTGGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGTCA 846
Query 540 CCGGGTTATCACTGTCGAAAACCTGCG-CAATGCCGGTTTCCATAACTGGGACAAGCTTA 598
| || || ||||||| ||||| || | |||||| |||||||| ||||||||||||||||
Sbjct 847 CAGGCTTGTCACTGTTGAAAATCT-CATCAATGCTGGTTTCCAGAACTGGGACAAGCTTA 905
Query 599 TTCTGAGATCGTTG-GATGAGCAGAACAAAACAGCGAC-CATATACAAGTCAGAGAAGAG 656
|||| ||||| | || || ||| |||||| ||||| | ||||||| || ||||||||
Sbjct 906 TTCTCAGATC-TCCAGAGGAACAGCACAAAATGGCGACAC-TATACAAATCTGAGAAGAG 963
Query 657 GGAGGAGATGGTGAAAGAAGGGTT-TAGGATCAGAGGCAATTCAGGTGACCAATGGAGTG 715
|| |||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||||
Sbjct 964 AGATGAGATGGTGAAAGA-GGGATATAGGATTAGAGGCAATTCAGGTGATCAATGGAGTG 1022
Query 716 ATTTATTGGGTTC-TGCAATGTCAGAAAGATCCTTCAAACTTC-CAAATCCCATGTATTA 773
|||| |||||| | | || |||| || |||| |||||||| | ||||||| ||||||||
Sbjct 1023 ATTTGTTGGGTACCTCCA-TGTCTCAACGATCTTTCAAACT-CGCAAATCCAATGTATTA 1080
Query 774 TATCCCCTGA 783
||||||||||
Sbjct 1081 TATCCCCTGA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5