BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329212
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24500.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1400 0.0
> AT4G24500.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:12658494-12660605 FORWARD LENGTH=1427
Length=1427
Score = 1400 bits (758), Expect = 0.0
Identities = 896/962 (93%), Gaps = 11/962 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATTCAGAGAGAAGAAAACAAATGTTAAAAGCAATGCGAATGGAAGCTGCTGCA 60
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 74 ATGGAAGATTCAGAGAAAAGAAAACAGATGTTAAAAGCAATGCGAATGGAAGCTGCAGCG 133
Query 61 CAGAATGATAATGATGATTCTACTACAGGTCCTGAAACATCTATGAACACAGGTCACCTC 120
||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 134 CAGAATG---ATGATGATGCTACTACAGGTACTGAAACATCTATGAGCACAGGTCACCTC 190
Query 121 TCCAATCCCTTGGCAGAGACATCCACTCACCACCAGGATTCATTTGAAACATC-AAGGTT 179
|||||||| |||||||||||||||| |||||| ||||||||||||||||| | ||||||
Sbjct 191 TCCAATCCATTGGCAGAGACATCCAATCACCAGCAGGATTCATTTGAAAC-GCAAAGGTT 249
Query 180 TGATTATTATACCGACCCCATGTCTGCTTATTCTAGTTTCAAGAAAAACAAGACCCCTAA 239
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 250 TGATTATTATACCGATCCCATGGCTGCTTATTCTAGTTTCAAGAAAAACAAGACCCCTAA 309
Query 240 GCAACAATACATCTCATCTCCTTGTCATCAAGCAAGCTCTCCTGTACCGCCACAGTTTCC 299
|||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||
Sbjct 310 GCAACAATACATCTCATCTCCTAGTCATCAAGGAAGCTCTCCTGTACCACCTCAGTTTCC 369
Query 300 GCCATCAGTTCCTCCAGGGTCGTTAGGTAGTGAGTATCAGGCACATACCAATCAGGGCGG 359
||||||||||||||||| || ||| ||||||||||||||||||| |||||||| || ||
Sbjct 370 ACCATCAGTTCCTCCAGGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGG 429
Query 360 CTTTCAAGCAGCTCATTATGAACCAAGAGGGATGTCACATCTTGCACCCCCATACAGAGG 419
|||||| ||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 430 CTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAGAGG 489
Query 420 TTCACCCGCCAGTTGGAATAACAATTTTAGGCCTCCACCAGTTAACCATCCAGGTCCACC 479
| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 490 TCCACCCGCCGGTTGGAATAACAACTTTAGGCCTCCACCAGTTAACCATTCAGGTCCACC 549
Query 480 TCAATGGGTACCTCGCCCTTTTCCATTTTCTCAAGAAACT-CCGGACATGGGGAATAATA 538
||||||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 550 TCAATGGGTACCTCGCCCTTTTCCATTCTCTCAAGAAA-TGCCGAACATGGGGAATAATA 608
Query 539 GATTTGGTGGTCAAGGCAGCTACAACAATAC-CGCTCCACATTTTTCCAATTATGGACGA 597
|||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 609 GATTTGGTGGTCGAGGCAGCTACAACAATACTC-CTCCACAGTTTTCCAATTATGGACGA 667
Query 598 CAAAATGCAAACTGGGTTGGAAACACATATCCTAACTCAGGAAGAGGCGGAAGTCGAGGA 657
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 668 CAAAATGCAAACTGGGGTGGAAACACGTATCCTAACTCAGGAAGAGGCAGAAGTCGAGGA 727
Query 658 CGCGGTATGAACACAAGCTTTGGTAGAGATGGAGGAAGAAGACCCATGGAACTAGGGGCA 717
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 728 CGCGGTATGAACACAAGCTTTGGGAGAGATGGAGGAAGAAGACCCATGGAACCAGGGGCA 787
Query 718 GAACGATATTACTCCAATTCCATGGCTGATGATCCATGGAAGTATCTTAAGCCAGTCATA 777
||||||| ||||||||| || |||||||| |||||||||||| |||||||||||||| ||
Sbjct 788 GAACGATTTTACTCCAACTCTATGGCTGAAGATCCATGGAAGCATCTTAAGCCAGTCTTA 847
Query 778 TGGAAGAGTTGCTCAGATGCTTCGAGCAGCAACTCAACAGGTCAAGCCTGGCTTCCCAAT 837
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 848 TGGAAGAATTGCTCAGATGCTTCGAGCAGCAGCTCAACAGGTCAAGCCTGGCTTCCCAAG 907
Query 838 TCTATAGCACCaaaaaaaTCTGTGACCTCAGAAGCTACCCACAAACCTAGCAATAATCAG 897
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 908 TCTATAGCACCAAAAAAATCTGTGACCTCAGAAGCTACCCACAAAACTAGCAGTAATCAG 967
Query 898 CAGAGCCTTGCTGAGTACCTCGCTGCATCTCTAGATGAG-GCTACATGCGATGAGTCAAG 956
|||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 968 CAGAGCCTTGCTGAGTACCTTGCTGCTTCTCTAGATG-GTGCTACATGCGATGAGTCAAG 1026
Query 957 CA 958
||
Sbjct 1027 CA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5