BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329238

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24204.3 | Symbols:  | RING/U-box superfamily protein | chr4...   665    0.0  


> AT4G24204.3 | Symbols:  | RING/U-box superfamily protein | chr4:12561780-12562933 
REVERSE LENGTH=944
Length=944

 Score =  665 bits (360),  Expect = 0.0
 Identities = 425/455 (93%), Gaps = 10/455 (2%)
 Strand=Plus/Plus

Query  25   GATGAGTTCGTTCGATGGTACTTGGAGTTATCCTTCTCAGCTAGAGTGGTGATTTATATT  84
            ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct  206  GATGAGTTCGTTCGATGGTACTTGGGGCTATCCTTCTCAGCTAGAGTGGTGATTTATATT  265

Query  85   ACAGTTTTGGGGACTATAATGACGATTACTTATTTGGTATTGAAATTCCTGAGCGAATGT  144
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  ACAGTTTTGGGAACAATAATGACGATTACTTATTTGGTATTGAAATTCCTGAGCGAATGT  325

Query  145  GACATGGAGGATGACACAGAGAGGCTACTACCATTGGTGGCAGAAGAAGAGGTCCAC-AC  203
            |||||||||||||||||| |||||||||  | |||||||||||||||||| ||| || ||
Sbjct  326  GACATGGAGGATGACACACAGAGGCTAC--C-ATTGGTGGCAGAAGAAGAAGTC-ACCAC  381

Query  204  CGTTTGGACGCCG---TTGATCAACGAGTC-TTCGGAGGTAACCGGGAAGGGAGATGTAG  259
            || ||||||||||   |||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct  382  CGATTGGACGCCGCCGTTGATCAATGAGTCGTT-GGAGGTAACGGGGAAGGGAGATGTAG  440

Query  260  AAACAGCGTCGTTTAGCTCGTCGGATGATGTGGACTACTCGACATTGTGTGTTATATGTT  319
            |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  441  AAACGGCGTCGTTTAGCTCGTCGGATGATGTGGACTACTCGACACTGTGTGTTATATGCT  500

Query  320  TCGAGGAACGTAGAAACTGTTTCTTTGTACCGTGCGGTCACTCTGCCACTTGTCGTGGCT  379
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  501  TCGAGGAACGTAGAAACTGTTTCTTTGTACCGTGTGGTCACTCTGCCACTTGTCGCGGCT  560

Query  380  GTGCTCAAAAGATCTTGTCGGAAGAAAATAAGGTGTGTCCGATTTGCCGAAGGGTAATAC  439
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct  561  GTGCTCAAAGGATCTTGTCGGAAGAAAGTAAGGTGTGTCCGATTTGCCGAAGGGTGATAC  620

Query  440  GCAAGTCTAAGAGATTAGTGTTGAAGAAGCTTTGA  474
            |||| || ||||||||||||||||| |||||||||
Sbjct  621  GCAAATCAAAGAGATTAGTGTTGAAAAAGCTTTGA  655



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5