BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329280 Length=402 Score E Sequences producing significant alignments: (Bits) Value AT4G23770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 396 1e-109 > AT4G23770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23780.1); Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:12383311-12384496 REVERSE LENGTH=1066 Length=1066 Score = 396 bits (214), Expect = 1e-109 Identities = 318/366 (87%), Gaps = 16/366 (4%) Strand=Plus/Plus Query 2 TGGACCAATCGGAGAAGAAATACAACAAATCGTCAGAAAATGTTTCATTTGCTGAACACA 61 ||||||||| || ||| || ||||||||||||| ||||||||||||||||||||||||| Sbjct 460 TGGACCAATTGGTGAACAAGTACAACAAATCGTGTGAAAATGTTTCATTTGCTGAACACA 519 Query 62 AGATTTTGAAAGAGAAGTATGAGAGTCTGATGATAGAGCATGAGGGCCTAATTAAAACGC 121 |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 520 TGATTTTGAAAGACAAGTATGAGAGTCTGGTGATAGAGCATGAGAGCCTAATTAAAACGC 579 Query 122 TTGAGTTTCTAGAGACAACTCATGGATTCACTGTAGATGATCTGGTGAATAAGCAAAGAG 181 | ||||| ||||||| |||||||||||||||||| || |||||||||| |||||||| || Sbjct 580 TCGAGTTGCTAGAGAAAACTCATGGATTCACTGTTGAAGATCTGGTGACTAAGCAAAAAG 639 Query 182 AAGCATTGGAGAGGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGCAGA 241 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 640 AAGCATTGGAGAAGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGGAGA 699 Query 242 AGAAGCTAGAGTTTGTCGAAAAGAATATCGAATACATAATGTC-GATGGATGATGAAACC 300 |||||||| || |||||||| || |||||||||||||||||| | || ||| | ||||| Sbjct 700 AGAAGCTAAAGACTGTCGAAAGGAGTATCGAATACATAATGTCTGTTG-ATGTTCAAACC 758 Query 301 GAGATGAATGGTGTGGATTCAGATGCGATGGT-GATTAGTGACGACGATGAAGAAAACCA 359 | | || ||| |||||||| ||| | || |||||| |||||||| | ||||| Sbjct 759 G-G-TG--TGG-----ATTCAGAT---ATG-TCGACTAGTGAGGACGATGATGGAAACCG 805 Query 360 AAGACA 365 |||||| Sbjct 806 AAGACA 811 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19001209122 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5