BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329280

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23770.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   396    1e-109


> AT4G23770.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G23780.1); 
Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses 
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:12383311-12384496 
REVERSE LENGTH=1066
Length=1066

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 318/366 (87%), Gaps = 16/366 (4%)
 Strand=Plus/Plus

Query  2    TGGACCAATCGGAGAAGAAATACAACAAATCGTCAGAAAATGTTTCATTTGCTGAACACA  61
            ||||||||| || ||| || |||||||||||||  |||||||||||||||||||||||||
Sbjct  460  TGGACCAATTGGTGAACAAGTACAACAAATCGTGTGAAAATGTTTCATTTGCTGAACACA  519

Query  62   AGATTTTGAAAGAGAAGTATGAGAGTCTGATGATAGAGCATGAGGGCCTAATTAAAACGC  121
             |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  520  TGATTTTGAAAGACAAGTATGAGAGTCTGGTGATAGAGCATGAGAGCCTAATTAAAACGC  579

Query  122  TTGAGTTTCTAGAGACAACTCATGGATTCACTGTAGATGATCTGGTGAATAAGCAAAGAG  181
            | ||||| ||||||| |||||||||||||||||| || |||||||||| |||||||| ||
Sbjct  580  TCGAGTTGCTAGAGAAAACTCATGGATTCACTGTTGAAGATCTGGTGACTAAGCAAAAAG  639

Query  182  AAGCATTGGAGAGGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGCAGA  241
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  640  AAGCATTGGAGAAGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGGAGA  699

Query  242  AGAAGCTAGAGTTTGTCGAAAAGAATATCGAATACATAATGTC-GATGGATGATGAAACC  300
            |||||||| ||  |||||||| || |||||||||||||||||| | || ||| | |||||
Sbjct  700  AGAAGCTAAAGACTGTCGAAAGGAGTATCGAATACATAATGTCTGTTG-ATGTTCAAACC  758

Query  301  GAGATGAATGGTGTGGATTCAGATGCGATGGT-GATTAGTGACGACGATGAAGAAAACCA  359
            | | ||  |||     ||||||||   ||| | || |||||| |||||||| | ||||| 
Sbjct  759  G-G-TG--TGG-----ATTCAGAT---ATG-TCGACTAGTGAGGACGATGATGGAAACCG  805

Query  360  AAGACA  365
            ||||||
Sbjct  806  AAGACA  811



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5