BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329281
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23760.1 | Symbols: | Cox19-like CHCH family protein | chr4... 322 8e-88
> AT4G23760.1 | Symbols: | Cox19-like CHCH family protein | chr4:12381845-12383034
FORWARD LENGTH=535
Length=535
Score = 322 bits (174), Expect = 8e-88
Identities = 201/214 (94%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAACAGAGTCCTCAACCAGTTTGCGGCCAAGAGGCTCTCCAACTTCTCAATTGC 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 ATGGAGAAACAGAGTACTCAACCAATTTGCGGCCAAGAGGCTCTCCAACTTCTCAATTGC 198
Query 61 GTCACGGAGTCCTC-TTTCGATCAAGAGAAATGCCTCCGATTCTTGCAATCTCTCAGAGA 119
||| ||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 199 GTCGCGGAGTC-TCCTTTCGATCAAGAGAAATGCGTCCGATTTTTGCAATCTCTCAGAGA 257
Query 120 ATGCGTTCTCTCAAAGAAAGTAAAGAAGTTCTCGATACCGAGTCAAGACCAAGACTCCGA 179
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 258 ATGCGTTCTATCAAAGAAAGTAAAGAAGTTCTCGATACCGAGTCAAGATCACGACTCTGA 317
Query 180 GGGAGCAGCTTCAGCTACTACGAGACCTTCATAA 213
|||||||||||||||||| | |||||||||||||
Sbjct 318 GGGAGCAGCTTCAGCTACAAAGAGACCTTCATAA 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5