BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329299
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23540.1 | Symbols: | ARM repeat superfamily protein | chr4... 3241 0.0
AT4G23530.1 | Symbols: | Protein of unknown function (DUF793) ... 407 2e-112
> AT4G23540.1 | Symbols: | ARM repeat superfamily protein | chr4:12280413-12286420
REVERSE LENGTH=3530
Length=3530
Score = 3241 bits (1755), Expect = 0.0
Identities = 1940/2031 (96%), Gaps = 6/2031 (0%)
Strand=Plus/Plus
Query 1 ATGAAAAATGCAATTGGAGATACTTCTAGCTCACAGGATCTTCAGCAATGCATTGGGTCT 60
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1369 ATGAAAAATGCAATCGGAGATACTTCTAGCTCACAAGATCTTCAGCAATGTATTGGGTCT 1428
Query 61 GCAGTGGTTGCCATGGGACCAGTAAAGCTACTGACACTTCTTCCTATCACTCTTCATGCT 120
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1429 GCAGTGGTGGCAATGGGACCAGTAAGGCTACTGACACTTCTTCCTATCACTCTTCATGCT 1488
Query 121 GAGAGTCACTCATGCACAAATGCTTGGCTAATTCCTATCTTAAGAAAATGTATAATTGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1489 GAGAGTCACTCATGCACAAATGCTTGGCTAATTCCTATCTTAAGAAAATATATCATTGGA 1548
Query 181 GCATCTCTTTCGTATTATGTTGATC-GCATTGTTCCGCTTGCAAAATCAGTGATGCTTGC 239
||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 1549 GCATCTCTTGCGTATTATGTTGA-CAACATTGTTCCGCTTGCAAAATCACTGATGCTTGC 1607
Query 240 TTCGAAAGGAGCTAAAAAGTCAGCTCCCGGCAAAGAGTTGCGGGCTTGTGGTCATGAGCT 299
||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1608 TTCTAAAGGAGCTAAAAAGTCAACTCACGGCAAAGAGTTGCGGGCTTGTGGTCATGAGCT 1667
Query 300 TCTGAGACTGTTACCTGCCTTTTGTAACTATCCAGTTGATGTGCCCAA-AAATTTTGGAT 358
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1668 TCTGAGACTGTTACCTGCCTTTTGTAACTATCCAGTTGATGTGGCCAACAAA-TTTGGAT 1726
Query 359 CGTTAGCCAAACTGATGGTTGAATTTATAAAAAATAAATCTTTCATGCATGAAGCTGTGG 418
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1727 CGTTAGCCAAACTGATGGTTAAATTTATCAAAAAGAAATCTTTCATGCATGAAGCTGTGG 1786
Query 419 CTCTTTCTCTACAGATGCTTGTAAATCAGAATAAAAGAATGCCTAAGCCCAGTACAGATA 478
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1787 CTCTTTCTCTGCAGATGCTTGTAAATCAGAATAAAGGAATGCCTAAGCCCAGTACAGATA 1846
Query 479 TGGGAGAAGCAAAAGCCATAAGCGAAGAAGATGCAACAACTGAGCTCGAAAGTGGATTTC 538
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1847 TGGGAGAAGCAAAAGCCATAAGCGAAGAAGATGCAACAACAGAGCTTGAAAGAGGATTTC 1906
Query 539 ACTATTCGAAGAAAGCTTCAACTAAAAACATGAAGGCTTTGGCATCAAGCTCGACAGAGT 598
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1907 ACTATTCGAAGAAAGCTTCAACGAAAAACATGAAAGCTTTGGCATCAAGCTCGACAGAGT 1966
Query 599 TGCTTCAAACTCTTGTTGATGTATTCACTGTTTCAGGCACAGAGATCAGTGCAGACTTTA 658
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1967 TGCTTCAAACTCTTGTTGATGTTTTCACAGTTTCAGGCACAGAGATCAGTGCAGACTTTA 2026
Query 659 AGGCTGCAATTGGATGCTTAGCTTCTACTCTGGATTCGTCAGTTAGGAAAAAGATTCTAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2027 AGGCTGCAATTGGATGCTTAGCTTCTACTCTGGATTCGTCAGTTAGGAAAAAGATTCTGA 2086
Query 719 TATCCTTGCTAAATAAGTTTGATCCTGCTGGTGAAAACGAGACTGAGGGGCAGGTCAATC 778
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2087 TATCCTTGCTAAATAAGTTTGATCCTGCCGGTGAAAGCGAGACTGAGGGGCAGGTCAATC 2146
Query 779 AATCGAATGATTCTATGGATGAAGAAAAAGAAAAGTGCAGTGCCACAAAGACACAGTTAA 838
|||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 2147 AATCGAATGATTCTGTCGATGAAGAAAAAGAAAACTGCAGTTCCACAAAGACACAGTTAA 2206
Query 839 AGAGGAGTGCTGTGTTGGGTCTTGCATCTTCATTTGTTGAAGGAGCCAAGGAAGATCTTA 898
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 AGAGGAGTGCTGTGCTGGATCTTGCATCTTCATTTGTTGAAGGAGCCAAGGAAGATCTTA 2266
Query 899 TTGAGTTGATTTATAATCTTGTTCGCCAAAGTTTTCAGGCCACCAACGAGGCTGATCTTC 958
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2267 TTGAGTTGATTTATAATCTTGTTCGCCAAAGTTTTCAGGCCACCGACGAGGCTGATCTTT 2326
Query 959 GTGGGGCATATGATACTCTGAGCAGAGTTCTAGAGGAACATGGTTGGTTTTGTGCATCTC 1018
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2327 ATGGGGCATATGATACTCTGAGCAGAGTTCTACAGGAACATGGTTGGTTTTGTGCATCTC 2386
Query 1019 ATTTTGCAGAAGTAATAGAGATGTTACTCAGCCATAAAACTCCAGAGGATGCGGCGTCTT 1078
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2387 ATTTTGCAGAGGTGATAGAGATGTTACTCAGCCATAAAACTCCAGAGGATGCGGCTTCTT 2446
Query 1079 CTAGAAGCCGATTTGCATGTCTCCACGTTCTAATGGCTCACGGAATTCAGTCAAGCACCG 1138
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2447 CTAGAAGCCGATTTGCATGTCTCCACGTCCTAATGGCTCATGGAATTCAGTCAAGCACCG 2506
Query 1139 AGGAAGAGAATGAGAAGGCTTTCCTTATTCTGAACGAGATGATCTTGACACTTAAAGATG 1198
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2507 AGGAGGAGAATGAGAAGGCTTTCCTTATTCTGAACGAGATGATCCTGACACTTAAAGAGG 2566
Query 1199 GGAAAGAAGAACATAGGAAAGCAGCTTGTGATGCACTGGTTATGGTGTATACCACCCTGA 1258
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2567 GGAAAGAAGAACATAGGAAAGCAGCTTGTGATACACTGGTTATGGTGTATACCACCCTGA 2626
Query 1259 AAAATTCATCATCTATCACCAGTGATGAACTTTGTCTTAAATTGATTAACATGATAACGG 1318
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2627 AAAATTCATCATCTATCACCAGTGATGAACTTTGTCCCAAATTGATTAACATGATAACGG 2686
Query 1319 GTTATATTCCTGGATCGTCTCCGCACATAAGGAGTGGAGCAGTGTCTGCATTATCTGTCT 1378
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2687 GTTATATTTCTGGAACGTCGCCGCACATAAGGAGTGGAGCAGTGTCTGCATTATCTGCCT 2746
Query 1379 TGATATACAAAGACCCTGAGATCTGCCTATCTTCACCTGAGCTTCTTTCATCTGTTTTAT 1438
|| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2747 TGGTATACAAAGACCCTGAGATATGCCTATCGTCACCTGAGCTTCTTTCATCTGTTTTAT 2806
Query 1439 CATTGCTTCACACCAAATCAATCGAGATAATAAAAGCTGTTTTGGGTTTTGTGAAAGTTT 1498
||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 2807 CATTGCTTCACACTAAATCCATTGAGATTATAAAAGCTGTTTTAGGTTTTGTGAAAGTTT 2866
Query 1499 TAGTCTCGACATCACAAGCCCAGGACTTGCAGAGTCTATTACAGAACCTCTTATACGAAA 1558
||||||| ||||| ||||| ||||||||||| |||||| | |||||||||||||||||||
Sbjct 2867 TAGTCTCAACATCGCAAGCTCAGGACTTGCACAGTCTACTGCAGAACCTCTTATACGAAA 2926
Query 1559 TTCTCCCTTGGTCGTCTGTTTCAAGACATTATTTTAAGTCAAAGGTAACGATCATAGTTG 1618
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2927 TTCTCCCCTGGTCGTCTGTTTCAAGACATTATTTTAAGTCGAAGGTAACGATCATAGTTG 2986
Query 1619 AGATTATGGTAAGGAAGTGCGGCACCCGCGCAGTCCAGTTAGCCACACCAGACAAGCACA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2987 AGATTATGGTAAGGAAGTGCGGCACCCGCGCAGTCCAGTTAGCCACACCAGACAAGCACA 3046
Query 1679 AAAATTTCATCCAGACAGTTTTAGAGAACCGTTCGGGGAAATCAAAAGACAAAGAAGAGA 1738
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3047 AGAGTTTCATCGAGACAGTTTTAGAGAACCGTTCGGGGAAATCAAAAGACAAAGAAGAGA 3106
Query 1739 CCAATGATTCACAGACTACATCCATCGATTCATCCAGAGAGCCGCGGAAAAGAAATTACA 1798
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 3107 CCAATGAGTCACAGACTACATCCATCGATCCATCCAGAGGGCCGCGGAAAAGAAATTACA 3166
Query 1799 GAGAAGCTTCATCAGAAACTACAGCCAAACAAGACGGCAACAAATTCAAACGGCAAAAGA 1858
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3167 GAGAAGCTTCATCAGAAACTACAGCCAAACAAGATGGCAACAAATTCAAACGGCAAAAGA 3226
Query 1859 GAACACATCAACAACACACACCTGCTTCCGGCATTAATGGAAGTAGAACAGGACCACAGC 1918
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 3227 GAACATATCAACAACACACACCTGCTTCCGACATTAATCAAAGTAGAACAGGACCACAGC 3286
Query 1919 GCCCCGCTAACAGAAGCTTCGGAAAACATAAGG-AAGCTTCTGGAAACAATCACAAGTCA 1977
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 3287 GCCCCGGTAACAGAAGCTTCGGAAAACA-AAGGGAAGCTTCTGGAAACAATCACAAGTCA 3345
Query 1978 GGAAAAGAAACACGAAAGCCACAGAAGAACAGATTCAGGAAAGCACCATGA 2028
|||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 3346 GGAAAAGAGACACGAAAGCCACAGAAGAACAGATTCAGGAAAGCAACATGA 3396
> AT4G23530.1 | Symbols: | Protein of unknown function (DUF793)
| chr4:12279075-12280851 FORWARD LENGTH=1777
Length=1777
Score = 407 bits (220), Expect = 2e-112
Identities = 241/251 (96%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 1779 GCCGCGGAAAAGAAATTACAGAGAAGCTTCATCAGAAACTACAGCCAAACAAGACGGCAA 1838
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1722 GCCGCGGAAAAGAAATTACAGAGAAGCTTCATCAGAAACTACAGCCAAACAAGATGGCAA 1663
Query 1839 CAAATTCAAACGGCAAAAGAGAACACATCAACAACACACACCTGCTTCCGGCATTAATGG 1898
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1662 CAAATTCAAACGGCAAAAGAGAACATATCAACAACACACACCTGCTTCCGACATTAATCA 1603
Query 1899 AAGTAGAACAGGACCACAGCGCCCCGCTAACAGAAGCTTCGGAAAACATAAGG-AAGCTT 1957
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1602 AAGTAGAACAGGACCACAGCGCCCCGGTAACAGAAGCTTCGGAAAACA-AAGGGAAGCTT 1544
Query 1958 CTGGAAACAATCACAAGTCAGGAAAAGAAACACGAAAGCCACAGAAGAACAGATTCAGGA 2017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1543 CTGGAAACAATCACAAGTCAGGAAAAGAGACACGAAAGCCACAGAAGAACAGATTCAGGA 1484
Query 2018 AAGCACCATGA 2028
||||| |||||
Sbjct 1483 AAGCAACATGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5