BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329301
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23520.1 | Symbols: | Cysteine proteinases superfamily prot... 1615 0.0
> AT4G23520.1 | Symbols: | Cysteine proteinases superfamily protein
| chr4:12274457-12276219 REVERSE LENGTH=1071
Length=1071
Score = 1615 bits (874), Expect = 0.0
Identities = 1011/1077 (94%), Gaps = 9/1077 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTTGTTAGACCTGTTTGCATGACAATCCTCTTAATTCTTTTTATAATATTCCTT 60
|||||||||||||||||||||||||||||||||||| | ||||||| || ||||| ||
Sbjct 1 ATGGGCTTTGTTAGACCTGTTTGCATGACAATCCTC-T--TTCTTTTGATTGTATTCGTT 57
Query 61 CTTTCAGTGCCGTCTTCGGCCATTGACCTACCCGCCACATCCGGTGGTCACAACCGGAGC 120
||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 58 CTTTCGGCGCCGTCCTCGGCCATGGACCTTCCCGCCACATCCGGTGGTCACAACCGGAGC 117
Query 121 AACGAGGAGGTTGGGTTTATCTTCCAAATGTGGATGTCCAAGCACGGGAAGACTTATACC 180
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 AACGAGGAGGTTGAGTTTATTTTCCAAATGTGGATGTCCAAGCACGGGAAGACTTATACC 177
Query 181 AATGCTCTCGGAGAGAAGGAACGGCGGTTTCAGAACTTCAAGGACAATCTCCATTTCATC 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 178 AATGCTCTCGGAGAGAAGGAACGGCGTTTTCAGAACTTCAAGGACAATCTCCGTTTCATC 237
Query 241 GACCAGCACAATGCAAAGAACCTCTCCTACCAGCTTGGTTTGACTCGGTTTGCTGACCTA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 238 GACCAGCACAATGCAAAGAACCTCTCTTACCAGCTTGGTTTGACTCGGTTTGCAGACCTA 297
Query 301 ACCGTTCAAGAGTACCGAGACCTTTTCCCTGGAAGCCCTAAACCAAAACAAAGGAATCTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 ACCGTTCAAGAGTACCGAGACCTTTTCCCTGGAAGCCCTAAACCGAAACAAAGGAATCTC 357
Query 361 AGAATCAGTCGTAGGTATGTGCCACTCGACGGAGATCAGCTTCCC-GAGTCAGTTGACTG 419
| || |||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 358 AAAACCAGTCGTAGGTACGTGCCACTCGCCGGAGATCAGC-TCCCAGAGTCAGTTGACTG 416
Query 420 GAGG-AACGAAGGTGCAGTGTCGGCTATTAAAGACCAAGGCACTTGCAACAGCTGCTGGG 478
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 GAGGCAA-GAAGGTGCAGTGTCGGAAATTAAAGACCAAGGCACTTGCAACAGCTGCTGGG 475
Query 479 CGTTCTCCACAGTGGCAGCAGTAGAGGGAATAAACAAGATCGTGACAGGAGAGTTAGTCT 538
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 476 CGTTCTCCACAGTGGCAGCAGTAGAGGGATTAAACAAGATTGTGACAGGAGAGTTAATCT 535
Query 539 CATTGTCCGAGCAAGAATTGGTCGACTGCAACTTAGTCAACAACGGTTGTTATGGATCAG 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 CATTGTCCGAGCAAGAATTGGTCGACTGCAACCTAGTCAACAACGGTTGTTATGGATCAG 595
Query 599 GCAC-AATGGACGCAGCTTTCCAGTTCCTTATCAATAACGGTGGTCTTGATTCCGATACA 657
| || ||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 596 G-ACTAATGGACACAGCTTTCCAGTTCCTTATCAATAACAATGGTCTTGATTCCGAAAAA 654
Query 658 GATTATCCATACCAGGGCTCTCAAGGCTACTGTAACCGCAAAGAGTCTACATCAAACAAG 717
|||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||
Sbjct 655 GATTATCCATACCAGGGCACTCAAGGCTCCTGTAACCGCAAACAGTCTACCTCAAACAAG 714
Query 718 ATCATCACTATTGATAGCTACGAGGATGTGCCAGCGAATGATGAGATTTCCTTACAAAAG 777
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GTCATCACGATTGATAGCTACGAGGATGTGCCAGCGAATGATGAGATTTCCTTACAAAAG 774
Query 778 GCGGTTGCTCACCAGCCCGTGAGTGTCGGCGTTGACAAAAAATCCCAAGAATTTATGCTC 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GCGGTTGCTCACCAGCCCGTGAGTGTTGGCGTTGACAAAAAATCCCAAGAATTTATGCTC 834
Query 838 TATCGATCGGGTATATATAATGGACCATGCGGGACAGATCTTGACCATGCACTTGTTATC 897
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 835 TATCGATCGTGTATATATAATGGACCATGCGGAACAAATCTTGACCATGCACTTGTTATC 894
Query 898 GTTGGGTACGGTAGTGAGAACGGTCAGGACTATTGGATCGTGAGAAACTCATGGGGCACG 957
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 895 GTCGGGTACGGTAGTGAGAACGGTCAGGACTATTGGATCGTGAGAAACTCATGGGGAACG 954
Query 958 ACGTGGGGAGATGCTGGCTACGCGAAGATGGCTCGTAACTTTGAATATCCATCAGGTGTA 1017
|| |||||||||||||||||| ||||| ||||||||||||||| ||||| |||| |
Sbjct 955 ACTTGGGGAGATGCTGGCTACATTAAGATTGCTCGTAACTTTGAAGATCCAAAAGGTCTC 1014
Query 1018 TGTGGGATTGCGATGCTTGCTTCATATCCTGTCAAGAATTCGGCTTCGAATGCATGA 1074
||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 1015 TGTGGAATTGCGATGCTTGCTTCATATCCTATTAAGAATTCGGCTTCCAATGCATGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5