BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329317 Length=1020 Score E Sequences producing significant alignments: (Bits) Value AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 857 0.0 > AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing protein | chr4:12113308-12115523 FORWARD LENGTH=1083 Length=1083 Score = 857 bits (464), Expect = 0.0 Identities = 540/577 (94%), Gaps = 3/577 (1%) Strand=Plus/Plus Query 445 AGAATGCTTAGGAAGTTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 504 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 AGAA-GCTTAGGAAGCTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 567 Query 505 CATCTTGTGGAAAAGACGATTTTGCGAGTTGGCCATCTTCCTGACATTGTGAAGGAGCAA 564 ||| ||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||| Sbjct 568 CATTTTGTGGAAAAGACAATTTTGCGAATAGGCCATCTTCGTGACATTGTGAAGGAGCAA 627 Query 565 AAGACTTTGATCTCGAGGAGTAAACGATCTGTTCCTCAAAGCTATATTATAAAAGCGGTG 624 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 628 AAGACTTTGATCTCGAGGAGTAAAAGAACTGTTCCTCAAAGCTATATTATAAAAGCGGTG 687 Query 625 GAAACAAGTCATGAAAGCAATAATGGGGTTAACTCGATCTTGGAAAATTTTGATTTGTTG 684 |||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||| Sbjct 688 GAAACAAGTCGTGAAAGCAATAATGTGGTTAACTCCATCTTGGAAAGTTTTGATTTGTTG 747 Query 685 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCC-G 743 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 748 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCAAG 807 Query 744 TTGTCGTACAAGTAAAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 803 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 T-GTCGTACAAGTAGAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 866 Query 804 TGTTTCAGTGGTGAGTGCTCTAGAGCAAGCTTTATATGATTCTTTGAAAGAAGATATATC 863 |||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| | Sbjct 867 TGTTTCGGTGGTGAGTGCTCTTGAGCAGGCTTTATATGATTCTTTGAAAGACGATATAGC 926 Query 864 AAAGTATAGTAACAAGTTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 923 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 AAAGTATAGTAACAAGGTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 986 Query 924 TGAATTAAAGGCCGACTTGGAAGAACCAATATTGGAGGAAGATGGTTCCTCATCCACCTC 983 ||||||||||| || ||||| |||||||||||| |||| |||| ||| ||||||| ||| Sbjct 987 TGAATTAAAGGTTGATTTGGAGGAACCAATATTGAAGGATGATGCTTCTTCATCCATCTC 1046 Query 984 CAGAAGTGTTGGGCACAAAGATTCTTTTGAAGATTAA 1020 || ||||||||||| ||||||||||| ||||| ||| Sbjct 1047 CAAAAGTGTTGGGCGGAAAGATTCTTTCGAAGAATAA 1083 Score = 521 bits (282), Expect = 4e-147 Identities = 358/394 (91%), Gaps = 7/394 (2%) Strand=Plus/Plus Query 5 AGCGGAAGAAGGAGAGTGAGGAAATGCGAGTGAATAAGAAAACAAAGTTAGAGTGGAGAC 64 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 14 AGCGGAAGAAGGAGAGTGAGGAAATGCTTTTGAATAAGAAAGCAAAGTTAGAGTGGAGAC 73 Query 65 CGGAGGATTGTGCTCAGGTAATTGGAGTATCAGATAAGTGTACTGGTGAGGGAGAAAAGA 124 ||||||||| ||| |||| ||||||| |||| |||||||||||||| |||| ||||||| Sbjct 74 CGGAGGATTATGCGCAGGCAATTGGATTATCTCATAAGTGTACTGGTAAGGGTGAAAAGA 133 Query 125 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 193 Query 185 TGCTACTGGTTCCAGAGGATGCAACCCAAAAGCCCTACGTTGCGATCATAAAGGATATTT 244 ||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||| Sbjct 194 TGCTATTGGTTCCAGAGGATGGAG---AAAAGCCCTATGTTGCGATCATAAAGGATATTT 250 Query 245 ATATACAA-GAAAAAGAAGAAT-ATGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 302 ||| |||| ||||| |||| | | ||||||||||||||||||||||||||||||||||| Sbjct 251 ATACACAAAGAAAA-GAAGG-TCACGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 308 Query 303 AGATGTGGAGAAAAAATATGTCGGAAAATGGGAACCCAAAGACTCAAGAGACCTTTTTTA 362 ||| ||||||||||||||||| ||||| ||| || |||||| |||||||||||| ||||| Sbjct 309 AGAGGTGGAGAAAAAATATGTTGGAAACTGGAAATCCAAAGGCTCAAGAGACCTCTTTTA 368 Query 363 CAGTTTCCATCGCGATGAAGTGTCTGCTGAATCT 396 ||||||||||||||| ||||| | |||||||||| Sbjct 369 CAGTTTCCATCGCGACGAAGTATTTGCTGAATCT 402 Score = 82.4 bits (44), Expect = 8e-15 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 397 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTAGTTTCATCGTGCAG 446 ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 437 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTGGCTTCATCGTGCAG 486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49982976265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5