BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329317
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 857 0.0
> AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing
protein | chr4:12113308-12115523 FORWARD LENGTH=1083
Length=1083
Score = 857 bits (464), Expect = 0.0
Identities = 540/577 (94%), Gaps = 3/577 (1%)
Strand=Plus/Plus
Query 445 AGAATGCTTAGGAAGTTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 504
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AGAA-GCTTAGGAAGCTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 567
Query 505 CATCTTGTGGAAAAGACGATTTTGCGAGTTGGCCATCTTCCTGACATTGTGAAGGAGCAA 564
||| ||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||
Sbjct 568 CATTTTGTGGAAAAGACAATTTTGCGAATAGGCCATCTTCGTGACATTGTGAAGGAGCAA 627
Query 565 AAGACTTTGATCTCGAGGAGTAAACGATCTGTTCCTCAAAGCTATATTATAAAAGCGGTG 624
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 628 AAGACTTTGATCTCGAGGAGTAAAAGAACTGTTCCTCAAAGCTATATTATAAAAGCGGTG 687
Query 625 GAAACAAGTCATGAAAGCAATAATGGGGTTAACTCGATCTTGGAAAATTTTGATTTGTTG 684
|||||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 688 GAAACAAGTCGTGAAAGCAATAATGTGGTTAACTCCATCTTGGAAAGTTTTGATTTGTTG 747
Query 685 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCC-G 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 748 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCAAG 807
Query 744 TTGTCGTACAAGTAAAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 803
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 T-GTCGTACAAGTAGAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 866
Query 804 TGTTTCAGTGGTGAGTGCTCTAGAGCAAGCTTTATATGATTCTTTGAAAGAAGATATATC 863
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
Sbjct 867 TGTTTCGGTGGTGAGTGCTCTTGAGCAGGCTTTATATGATTCTTTGAAAGACGATATAGC 926
Query 864 AAAGTATAGTAACAAGTTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 923
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AAAGTATAGTAACAAGGTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 986
Query 924 TGAATTAAAGGCCGACTTGGAAGAACCAATATTGGAGGAAGATGGTTCCTCATCCACCTC 983
||||||||||| || ||||| |||||||||||| |||| |||| ||| ||||||| |||
Sbjct 987 TGAATTAAAGGTTGATTTGGAGGAACCAATATTGAAGGATGATGCTTCTTCATCCATCTC 1046
Query 984 CAGAAGTGTTGGGCACAAAGATTCTTTTGAAGATTAA 1020
|| ||||||||||| ||||||||||| ||||| |||
Sbjct 1047 CAAAAGTGTTGGGCGGAAAGATTCTTTCGAAGAATAA 1083
Score = 521 bits (282), Expect = 4e-147
Identities = 358/394 (91%), Gaps = 7/394 (2%)
Strand=Plus/Plus
Query 5 AGCGGAAGAAGGAGAGTGAGGAAATGCGAGTGAATAAGAAAACAAAGTTAGAGTGGAGAC 64
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 14 AGCGGAAGAAGGAGAGTGAGGAAATGCTTTTGAATAAGAAAGCAAAGTTAGAGTGGAGAC 73
Query 65 CGGAGGATTGTGCTCAGGTAATTGGAGTATCAGATAAGTGTACTGGTGAGGGAGAAAAGA 124
||||||||| ||| |||| ||||||| |||| |||||||||||||| |||| |||||||
Sbjct 74 CGGAGGATTATGCGCAGGCAATTGGATTATCTCATAAGTGTACTGGTAAGGGTGAAAAGA 133
Query 125 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 193
Query 185 TGCTACTGGTTCCAGAGGATGCAACCCAAAAGCCCTACGTTGCGATCATAAAGGATATTT 244
||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 194 TGCTATTGGTTCCAGAGGATGGAG---AAAAGCCCTATGTTGCGATCATAAAGGATATTT 250
Query 245 ATATACAA-GAAAAAGAAGAAT-ATGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 302
||| |||| ||||| |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 251 ATACACAAAGAAAA-GAAGG-TCACGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 308
Query 303 AGATGTGGAGAAAAAATATGTCGGAAAATGGGAACCCAAAGACTCAAGAGACCTTTTTTA 362
||| ||||||||||||||||| ||||| ||| || |||||| |||||||||||| |||||
Sbjct 309 AGAGGTGGAGAAAAAATATGTTGGAAACTGGAAATCCAAAGGCTCAAGAGACCTCTTTTA 368
Query 363 CAGTTTCCATCGCGATGAAGTGTCTGCTGAATCT 396
||||||||||||||| ||||| | ||||||||||
Sbjct 369 CAGTTTCCATCGCGACGAAGTATTTGCTGAATCT 402
Score = 82.4 bits (44), Expect = 8e-15
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 397 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTAGTTTCATCGTGCAG 446
||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 437 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTGGCTTCATCGTGCAG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5