BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329320
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23090.2 | Symbols: | unknown protein; Has 7 Blast hits to ... 702 0.0
> AT4G23090.2 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:12100391-12101483 REVERSE LENGTH=627
Length=627
Score = 702 bits (380), Expect = 0.0
Identities = 497/553 (90%), Gaps = 9/553 (2%)
Strand=Plus/Plus
Query 1 ATGAGCGAGAACTCTTCGATTACCGTGGATCAGCCAACAAGACAAAATGGTATTGTCCGA 60
||||||||||||||||||||||| |||||||||||||||| | ||||||||| || || |
Sbjct 73 ATGAGCGAGAACTCTTCGATTACAGTGGATCAGCCAACAACAGAAAATGGTAATGGCCAA 132
Query 61 GGAGGGCAGGTGATTCCATTGGCTAATATG-CG--TCCTCTGTCACCACCCACTGCACGC 117
|||| ||||||||||| ||||| ||||||| || |||||||||||||||||| ||||||
Sbjct 133 GGAGAGCAGGTGATTCAATTGGGTAATATGCCGCCTCCTCTGTCACCACCCACCGCACGC 192
Query 118 AGAATCATAGTGATCCCGAATCGAGCCGACATTGTCAGTGTACTGGCATATATTTCTA-G 176
|||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||| |
Sbjct 193 AGAATCCTAGTGATCCCGCATGGAGCCGAAATTGTCAGTGTACTGGCATATATTTCTAGG 252
Query 177 GATCTCTCGTCAGGCAGTCTACATCTTGTCAGGGAGGGGATACGTTTCACAAGCCTCCTT 236
| | ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 253 GCT-TCTCGTCAGGCAGTCTACATCTTGTCAGGGAGGGGATGCGTTTCACGAGCCAACTT 311
Query 237 GTTATCGTTACCA-TCCCGAGAAAACCGCATGGGTCGTGGGATTATTCTTTACTTGAGTG 295
| | ||||||||| ||| ||| ||||||||||||| ||||| || |||||||||||||
Sbjct 312 GGTGTCGTTACCAATCC-GAGGAAACCGCATGGGTATTGGGAGAATACTTTACTTGAGTG 370
Query 296 GATGGTTCCAACCGATGCTCACAGATGTAGGTCTTGCTGTACAATCTAGTCGCCCCAACG 355
|||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||
Sbjct 371 GATGGTTCCAACCGATGCTCACTGATGTAGGTGTTGCTGTACATTCTAGTCGTCCCAACG 430
Query 356 GAATACTCCATGTCTCCCTTTCAGGTGTTTCACAAAGTGTTGCTATAGCAAATCAGCTTA 415
||||||| || |||||||||||||||||||||| |||||||||||| ||| |||| |||
Sbjct 431 GAATACTTCACGTCTCCCTTTCAGGTGTTTCACCAAGTGTTGCTATTGCATATCAACTTT 490
Query 416 TTGCTTTCGGAGATGTTGAGGTGGATGTTATTTTTGTTTGCGGACCGGGGACATTATTT- 474
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 491 TTGCTTTCGGAGATGTTGAGGTGGATGTTTTTTTTGTTTGCGGACCGGGGTCAATATTTC 550
Query 475 ACCCCGGATGCACCAGGTGGACCGAGAGAACGGGTACGAGTTAATGCAGTACCAGTAGCA 534
| || |||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 551 AACC-GGATGCACCAGGTGCACCGAGAGAACGGGTACGAGTTAATGGAGTAGCATTAGCA 609
Query 535 CAAGCACCCGCTG 547
|||||||| ||||
Sbjct 610 CAAGCACCTGCTG 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5