BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329351
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2457 0.0
AT4G22758.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1016 0.0
> AT4G22760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11960553-11962289 FORWARD LENGTH=1737
Length=1737
Score = 2457 bits (1330), Expect = 0.0
Identities = 1588/1710 (93%), Gaps = 27/1710 (2%)
Strand=Plus/Plus
Query 775 ATGTTGGATTCTAGGCTGAGATTCTTCCTTGAAAGATGTGTAGTGATTCAACAGGCGAAG 834
||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1 ATGTTGGATTCTAAGCTGAGATTCTTCCTTCAAAGATGTGTAGTGCTTGAACAGGCGAAG 60
Query 835 CAAGTTCATGCACAGTTAGTAGTGAACCGTTATAACCATCTTGAACCCATCTTGGTTCAC 894
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAAGTTCATGCACAGTTAGTAGTGAACCGCTATAACCATCTTGAACCCATCTTGGTTCAC 120
Query 895 CAAACTCTTCACTTCACTAAAGAGTTCTCTAGAAATGTTGTCAA-CTATGTCAAAAGAAT 953
|||||||||||||||||||||||||||||||| ||| |||| || |||||| ||||||||
Sbjct 121 CAAACTCTTCACTTCACTAAAGAGTTCTCTAGGAATATTGT-AACCTATGTTAAAAGAAT 179
Query 954 CCTCCACGGGTTTAAGAGTTCCAAAGGT-ATGGATTCTTTCTCTTGGGGATGTCTT-GTT 1011
|||| | |||||| | | | ||| || ||||||||||| ||||| ||| || |||
Sbjct 180 CCTCAAGGGGTTT-A-A--T-----GGTCAT-GATTCTTTCTCCTGGGGGTGT-TTAGTT 228
Query 1012 CGGTTCTTGAGTCAGCATAGGAAGTTTAAAGAAACGGTTGGCGTCTACATCGAAATGCAT 1071
|||||||| || |||||||||||||||||||||||||||| ||| || || || ||||||
Sbjct 229 CGGTTCTTAAGCCAGCATAGGAAGTTTAAAGAAACGGTTGACGTGTATATTGATATGCAT 288
Query 1072 TATTCTGGGATTCCTCCTAGTTCACATGCTATAACCTCAGTGTTGAGAGCTTGTGGTAAG 1131
| |||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 289 AACTCTGGGATTCCTCCAAGTTCACATGCTGTAACCTCAGTGTTAAGAGCCTGTGGTAAA 348
Query 1132 ATGGAGGATATGGTTGATGGCAAACCGATTCATGCTCAGGCTCTTAAAAATGGATTGTGT 1191
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 349 ATGGAGAATATGGTTGATGGTAAACCGATTCATGCTCAGGCTCTGAAAAATGGATTGTGT 408
Query 1192 GGTTGTGTTTATGTTCAGACAGGTCTGGTGGGTTTGTACTCTAGA-TTCGGTTACATTGA 1250
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 409 GGTTGTGTTTATGTTCAGACAGGTCTGGTGGGTTTGTATTCTAGACTT-GGTTACATTGA 467
Query 1251 GATGGCAAAGAAGGTATTTGATGATATTGCAGAGAAGAACACAGTTTCGTGGAACTCGCT 1310
| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 GCTGGCAAAGAAGGCGTTTGATGATATTGCTGAGAAGAACACAGTTTCGTGGAACTCGCT 527
Query 1311 TTTACACGGGTATCTGGAAAG-TGGGAATCTAGATGAAGCTCGCAGAGTCTTTGACAAGA 1369
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 528 ATTACACGGGTATCTGGAAAGCGGGGAA-CTAGATGAGGCTCGCAGAGTCTTTGACAAGA 586
Query 1370 TTCCAGAGAAAGATGTTGTGTCATGGAATCTGATTATCTCGAGCTATGCaaaaaaaGGTG 1429
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCCCTGAGAAAGATGCTGTGTCATGGAATCTGATTATCTCGAGCTATGCAAAAAAAGGTG 646
Query 1430 ACATGAGCAATGCATGCTCTTTG-TTTCTGACGATGCCTTTGAAAAGCT-CTGCTACTTG 1487
||||| ||||||||||||||||| |||| | | |||||||||||||| | | ||| ||||
Sbjct 647 ACATGGGCAATGCATGCTCTTTGTTTTCAG-CAATGCCTTTGAAAAG-TCCGGCTTCTTG 704
Query 1488 GAATATTTTGATTGGCGGGTATGTGAATTGCAGGGAAATGAAACTAGCAAGAACCTATTT 1547
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 705 GAATATATTGATAGGCGGGTATGTGAATTGCAGGGAAATGAAACTAGCAAGAACCTACTT 764
Query 1548 CGATACAATGCCCCAGAAGAATAGTGTCTCTTGGATTACAATGATTTCAGGGTACACAAA 1607
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 765 CGATGCAATGCCCCAGAAGAATGGTGTCTCTTGGATTACAATGATTTCAGGGTACACAAA 824
Query 1608 ATTGGGAGATGTTCAGTCTGCTGAAAAGCTCTTCAGACAGATGTCTAAGAAAGACAAACT 1667
|||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 825 ATTGGGAGATGTTCAGTCTGCTGAGGAGCTCTTTAGACTGATGTCTAAGAAAGACAAACT 884
Query 1668 CGTCTATGATGCCATGATTGCTTGTTATGCTCAAAACGGCAAGCCAAAGGATGCTCTGAA 1727
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 885 CGTCTATGATGCCATGATAGCTTGTTATACTCAAAACGGCAAGCCAAAGGATGCTCTGAA 944
Query 1728 GCTATTCTCTCAGATGCTTGAAAGTAATTTAGATATTCAACCGGATGAGATCACACTCTC 1787
||||||| |||||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 945 GCTATTCGCTCAGATGCTTGAAAGGAATTCATATATTCAGCCGGATGAGATCACACTCTC 1004
Query 1788 AAGTGTTGTATCAGCTAGTTCACAGTTGGGTGATACCAGTTTTGGTACATGGGTTGAGTC 1847
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1005 AAGTGTTGTATCAGCTAATTCACAGTTGGGTAATACCAGTTTTGGTACATGGGTTGAGTC 1064
Query 1848 ATACATAACCGAACGTGGAATCATGATCGATGATCTTTTAAGTACCTCTCTAATCGATCT 1907
||| |||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 1065 ATATATAACCGAACATGGAATCAAGATCGATGATCTCTTAAGTACCTCTCTAATTGATCT 1124
Query 1908 TTACATGAAAGGCGGAGACTTTGCCAAGGCATTCAAATTGTTCAACGATCTAATCAAAAA 1967
||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||
Sbjct 1125 TTACATGAAAGGCGGAGACTTTGCCAAGGCATTCAAAATGTTCAGCAATCTAAACAAAAA 1184
Query 1968 GGACACAGTTTCTTACTCTGCTATGATCATGGGCTGTGGGATAAACGGCATGGCCACAGA 2027
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1185 GGACACAGTTTCTTACTCTGCTATGATCATGGGCTGCGGGATAAACGGCATGGCCACAGA 1244
Query 2028 AGCAAACCGTTTGTTTAGAGAGATGATCGAAAAGAAGATCCCTCCAAATCTAGTAACATT 2087
||||||| ||||||||| || ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1245 AGCAAACAGTTTGTTTACAGCTATGATTGAAAAGAAGATCCCTCCAAATGTAGTAACATT 1304
Query 2088 CACTGGACTATTATCAGCGTATAGCCATTCAGGTCTTGTTCAAGAAGGCTACAAATGCTT 2147
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CACAGGACTATTATCAGCGTATAGCCATTCAGGTCTTGTTCAAGAAGGCTACAAATGCTT 1364
Query 2148 TAACTCCATGAAAGACCACAACCTAGAACCCTCCGCTGATCATTATGGGATAATGGTGGA 2207
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1365 TAACTCCATGAAAGACCACAACTTGGAACCCTCCGCTGATCATTATGGGATAATGGTGGA 1424
Query 2208 TATGTTGGGACGAGCCGGGAGGCTAGTGGAGGCATATGAACTGATCAAGAGTATGCCGAT 2267
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1425 TATGTTGGGACGAGCCGGGAGGCTAGAAGAAGCATATGAGCTGATCAAGAGTATGCCGAT 1484
Query 2268 GCAGCCAAATGCTGGAGTTTGGGGAGCGTTGCTTTTAGCCAGTGGGTTACACAACAACGT 2327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1485 GCAGCCAAATGCTGGAGTTTGGGGAGCTTTGCTTTTAGCCAGTGGGTTACACAACAACGT 1544
Query 2328 TGAATTTGGAGAGATTGCGTGCAGTCACTGCGTTAAACTGGAGACCGATCCTACGGGTTA 2387
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1545 TGAATTTGGAGAGATTGCGTGCAGTCACTGCGTTAAACTCGAGACAGATCCTACAGGTTA 1604
Query 2388 TCTTTCGCATCTTGCTAAT-ATATATAT-GTCTGTTGGTAGATGGGACGATGCAAGGAAT 2445
||||||||||||||||| | |||||| | |||||||||||||||||||||||| |||| |
Sbjct 1605 TCTTTCGCATCTTGCTA-TGATATAT-TCGTCTGTTGGTAGATGGGACGATGCCAGGACT 1662
Query 2446 GTTAGAGATAGTATGGAAGAGAAGAAACTG 2475
|||||||| ||||| ||||||||||||||
Sbjct 1663 GTTAGAGACAGTATAAAAGAGAAGAAACTG 1692
> AT4G22758.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G27830.1). | chr4:11958310-11960036 FORWARD
LENGTH=1067
Length=1067
Score = 1016 bits (550), Expect = 0.0
Identities = 689/756 (91%), Gaps = 9/756 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGATTCAATTCACCGGAGAAAAGTTCCGACTCCGGTCGGAAATGGAGGTCGGAGC 60
||||| ||||| |||||||||||||||||| ||| ||| || ||||||||||||||||||
Sbjct 168 ATGTCTGATTCGATTCACCGGAGAAAAGTTTCGAATCCTGTAGGAAATGGAGGTCGGAGC 227
Query 61 TCCAGGACGAGACGAACAGCTTTCCGATATGTTTCCGACAAGAATAGTCTCTCTAAATCG 120
||||| || ||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 228 TCCAGAACAAGACGAACAGCTTTCAGATATGTTTCCGACAAGAATAATCGCTCTAAATCG 287
Query 121 AGTAATAAGGTTTTTGA-ACGAAGCTTCTCAGAACCGAGTCTAAATCGTCGCCGCGATGG 179
|||||||||||||| || | ||||||||||||| |||||||| ||||| | |||||| ||
Sbjct 288 AGTAATAAGGTTTTCGAGA-GAAGCTTCTCAGAGCCGAGTCTTAATCGCCACCGCGACGG 346
Query 180 AGACAGTAATCACTTGCGACGACCATCGCCGATGAGAGGTTTACC-ATTG--GAAGAATC 236
| | |||||||||||||| |||||||||||||||||||||||||| || | |||||| |
Sbjct 347 ACAGAGTAATCACTTGCGGCGACCATCGCCGATGAGAGGTTTACCGATGGAAGAAGAAAC 406
Query 237 CGAACCGATCGTTTACTTGCC-ACGGATTCGCTCTGAGGTTTTCGCTTCTTCTCCGTCGT 295
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 407 AAAACCGATCGTTTACTTGCCTA-GGATTCGCTCTGAGGTTTTCGCTTCGTCTCCGTCGT 465
Query 296 TGTTGAACTTCTCTTCGCCGTCGTCTTTATCTCCGATCAATCAAGAGGGTAATACAAAAG 355
|||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 466 TGTTGAACTTATATTCGCCCTCGTCTTCATCTCCGATCAATCAAGAGGGTAATACAAAAG 525
Query 356 AAGCACCAAAAGTAGTAATCAGTGTAGCAGTAGAAGGAAGTCCTGGACCTGTAAGAGCAA 415
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 526 AAGCACCAAAAGTAATAATCAGTGTAGCAGTAGAAGGAAGTCCTGGACCGGTAAGAGCAA 585
Query 416 TGGTTAAATTGAGTTGCAACGTCGAGGAAACGATCAAAATTGTCGTGGACAAATACTGCA 475
|||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 586 TGGTTAAACTGAGTTGCAACGTCGAAGAAACGATCAAAATTGTCGTTGACAAGTACTGTA 645
Query 476 AAGAAGGACGAACTCCAAAACTCGATCGAGATTCTGCTTTTGAATTGCATCAGTCACATT 535
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 646 AAGAAGGAAGAACTCCAAAACTCGATCGAGATTCTGCCTTTGAATTGCATCAGTCACATT 705
Query 536 TTAGCATTCAGTGTTTGGAGAAAAGAGAAATAATAGGAGAAATAGGAAGTAGAAGCTTCT 595
| ||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 706 TCAGCATCCAGTGTTTGGAGAAAAGAGAAATAATTGGAGAATTAGGCAGTAGAAGCTTCT 765
Query 596 ACATGAGAAAGAAAGCTCATGAAACCGAAGGTTCGTTTGTCGGGACTACTCCGGTGAGAA 655
|||||||||||||||||| |||||||| ||||||||| | ||||| | |||| | |||||
Sbjct 766 ACATGAGAAAGAAAGCTCCTGAAACCGGAGGTTCGTTCGCCGGGATTTCTCCAGCGAGAA 825
Query 656 CTACCCTAATTTCGTCGTCGAATTTGATCGGATCGTACATTGCTCAGTTAATAGGGAAAA 715
| | ||||||| |||||||||||||||||||||||| ||| |||||||| || |||||||
Sbjct 826 CGAGCCTAATTCCGTCGTCGAATTTGATCGGATCGTGCATCGCTCAGTTGATTGGGAAAA 885
Query 716 TCATGAGGAGAACAAGACAG-ATATGGAACATATTG 750
||||||||||||||||| || |||||||||||||||
Sbjct 886 TCATGAGGAGAACAAGA-AGGATATGGAACATATTG 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127022699676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5