BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329373

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22520.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   438    1e-122


> AT4G22520.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11858614-11858970 
FORWARD LENGTH=357
Length=357

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 310/345 (90%), Gaps = 6/345 (2%)
 Strand=Plus/Plus

Query  1    ATGATGAAAAACACTATAGCTCTCTTCCTCATCATCAACCTCGTCTTCCTTGGCTTCACA  60
            |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct  16   ATGATGAAAAACGCTATAGCTCTCTTCCTCACCATTAACCTCGTCTTCCTTGTCTTCACA  75

Query  61   AAGGCCCAAGTTCCTCCACCTCAAGCTCCGGTGTGTCCTAGAGACTCGA-TCAATTTCAT  119
            |||||||||| ||||||||||||||||||||||||||| ||||||||||  ||| ||| |
Sbjct  76   AAGGCCCAAGCTCCTCCACCTCAAGCTCCGGTGTGTCCCAGAGACTCGACCCAA-TTCCT  134

Query  120  ATCTTGTAGC-AACGTATTTCGCCTCAGCTTAATCCTCATCAACAAACAAACAGTGTTGC  178
            |||||||| | |||||  ||  |||||||||||||||||||||||| ||| |||| ||||
Sbjct  135  ATCTTGTA-CTAACGTGCTTAACCTCAGCTTAATCCTCATCAACAATCAATCAGTATTGC  193

Query  179  CATGCTGCACTCTAGTGGCTGGGCTTGACGCGGCTGCGGCATCTGCCTGCATCTGCAATG  238
            |||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  194  CATGTTGCACTCTAGTGACTGGGCTTGACGCTGCTACGGCATCTGCCTGCATCTGCAATG  253

Query  239  CCGTTAGAATCACAATCTTCAATTTCTTGACAATCAATCTGCGAGTTGACCGGGTTCTTA  298
            ||||||||||||||||||| ||||||||||| |||||| || ||||| |||  |||||||
Sbjct  254  CCGTTAGAATCACAATCTTTAATTTCTTGACTATCAATGTGAGAGTTAACCAAGTTCTTA  313

Query  299  GACTCTGCCGTATACTTCCCCCAGCT-GGTTTCCGATGCGCTTAA  342
            |||||||||||||| |||||||| || |||||| ||||| |||||
Sbjct  314  GACTCTGCCGTATAATTCCCCCA-CTTGGTTTCAGATGCCCTTAA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5