BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329375
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22470.1 | Symbols: | protease inhibitor/seed storage/lipid... 1057 0.0
> AT4G22470.1 | Symbols: | protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein | chr4:11840134-11841450
REVERSE LENGTH=1317
Length=1317
Score = 1057 bits (572), Expect = 0.0
Identities = 979/1164 (84%), Gaps = 74/1164 (6%)
Strand=Plus/Plus
Query 6 ATCAAGAATGGCCTCAACTACTATAATCATTTTTCTCTCATTCAGCATTATTCCATTACT 65
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 1 ATCAAGAATGGCCTCAACTACTATAATCCTTTTCCTCTCATTCAGCATCATTCCATTACT 60
Query 66 CACCATCGTTAGAGCACATAACCATTCTGTCCATTGCCCTCCACCACCACCTTGTATTTG 125
|||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||
Sbjct 61 CACCATCGTTAGAGCAGATAACCATTCCGTTTACTGCCCTCCACCACCACCTTGTATTTG 120
Query 126 TATTTGTAATCCCACG-CCACCTCCGCCACCATCCAATACCCAGCCGCC-ACTGCC-GCA 182
|||||||||| || | ||||||||||| | | || || |||| ||||| ||| || ||
Sbjct 121 TATTTGTAAT-CCGGGACCACCTCCGCCGCAACCCGATCCCCAACCGCCAACT-CCACCA 178
Query 183 ACCCGATCCACAACC-GCCAACTCCA-CCAACAT-TTCAaccagcaccgccaccca-atg 238
| | || ||||| | || | ||| || | || |||||| | || ||| ||| | |
Sbjct 179 A--C-AT-TTCAACCAG-CACCGCCAGCC-A-ATGACCAACCACCGCCTCCA-CCACA-G 229
Query 239 acca-accaccgcctcc-gcca-cagaccacaccacca-c-c-tccactagcga-cc--a 289
| || | |||| ||||| | | | ||||||||||||| | | ||| | | | || |
Sbjct 230 AGCACATCACCACCTCCAG-TAGC-GACCACACCACCAGCACTTCCTCCA-AAACCCTTA 286
Query 290 -caccaccgccact-tcctcc-aaaagccttaccaccaccGTTGTCTCCTCCA-C-A-AA 343
| |||||| | |||||| ||| || | ||||||| | |||| ||| | | |
Sbjct 287 CCGCCACCG-TTGTCTCCTCCGCAAA-CC--A-CACCACC--T-CCTCCACCAGCTATTA 338
Query 344 CAATAACACCTCCTCCA-CCAGTA-A--T-CACT-CCACCTCCGCCA--GGCT-TTAGCT 394
|| | ||||||| ||| | | || | | |||| ||||||| ||| ||| ||| |
Sbjct 339 CACCACCACCTCCACCAGCTATTACACCTCCACTATCACCTCCTCCACCAGCTATTA-C- 396
Query 395 GTCC-CGGACCAT-CACCAACAATCTCACCACCGCCACTTCCTCCGCAAA-CCTTA---C 448
|| | ||| | ||| | | | | |||||||| |||||||||| ||| ||||| |
Sbjct 397 -ACCAC-CACC-TCCACTAGCGACCACACCACCGGCACTTCCTCC-AAAACCCTTACCGC 452
Query 449 CACC---GCCTCCGCCACAAACGACACCACCTCCTCCACCAGCTACT-ACACCACCACTA 504
|||| | |||| |||||||| || ||||||||||||||||| | | ||||||||||||
Sbjct 453 CACCGTTGTCTCCTCCACAAACCACGCCACCTCCTCCACCAGC-AATCACACCACCACTA 511
Query 505 TCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCC-GA 563
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 512 TCACCTCCTCTGGTTGGAATATGTTCCAAGAATGATACCGAACTAAAGATATGTGCCGGA 571
Query 564 GATTCTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCAT 623
|||||||||||||||| | || || |||| |||||||||||||| ||||||||||||||
Sbjct 572 -ATTCTAGCAATTAGTGACGGTCTTCTAACCACTGGAAGAGCAGAACCATGTTGTTCCAT 630
Query 624 CGTCCGTAATATCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCA-C 682
| |||| ||| | |||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 631 CATCCGAAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAATCGGTAGGAGCACC 690
Query 683 AGCGTTTTTCTCTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATTC 742
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 691 A-CGTTTTTCCCTCTCTCCCAATTTCGGCATCTTCTTTAAAGTTTGTGGTCGTAGGATTC 749
Query 743 CACAAGGCTTTAGCTGTCCTGGACCATCACCAACAATCTCACCCCCACCACTTCCTCCAC 802
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 750 CACAAGGCTTTAGCTGTCCCGGTCCATCACCAACAATCTCACCACCACCACTTCCTCCAC 809
Query 803 AAACTTTACCACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTACTACACCAC 862
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 810 AAACTTTAAAACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTATTACACCAC 869
Query 863 CACTATCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTG 922
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 870 CACTATCACCTCCTCTAGTTGGCATATGCTCCAAGAATGATACCGAACTAAAGATATGTG 929
Query 923 CCGAAATTTTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTT 982
||| |||| |||||||||||| | | || |||| ||||| || ||||||||||||||||
Sbjct 930 CCGGAATTCTAGCAATTAGTGACGGCCTTCTAACCACTGGTAGGGCAGAGCCATGTTGTT 989
Query 983 CCATCGTCCGTAATGTCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAG 1042
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 990 CCATCGTACGTAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAG 1049
Query 1043 CACGGCGTTtctctctctctcCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGA 1102
|| | ||||| || |||||||||||||| |||| ||||||||| ||||||||||| ||||
Sbjct 1050 CAAGACGTTTTTCCCTCTCTCCCAATTTTGGCATCTTCTTTAAGGTTTGTGGTCGCAGGA 1109
Query 1103 TTCCACAAGGCTTTAGCTGCCCAT 1126
||||||||||||||||||||||||
Sbjct 1110 TTCCACAAGGCTTTAGCTGCCCAT 1133
Score = 521 bits (282), Expect = 4e-147
Identities = 356/391 (91%), Gaps = 7/391 (2%)
Strand=Plus/Plus
Query 384 AGGCTTTAGCTGTCCCGGACCATCACCAACAATCTCACCACCGCCACTTCCTCCGCAAAC 443
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 754 AGGCTTTAGCTGTCCCGGTCCATCACCAACAATCTCACCACCACCACTTCCTCCACAAAC 813
Query 444 CTTACCACCGCCTCCGCCACAAACGACACCACCTCCTCCACCAGCTACTACACCACCACT 503
||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 814 TTTAAAACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTATTACACCACCACT 873
Query 504 ATCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCC-G 562
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 874 ATCACCTCCTCTAGTTGGCATATGCTCCAAGAATGATACCGAACTAAAGATATGTGCCGG 933
Query 563 AGATTCTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCA 622
| |||||||||||||||| | | || |||| ||||| || |||||||||||||||||||
Sbjct 934 A-ATTCTAGCAATTAGTGACGGCCTTCTAACCACTGGTAGGGCAGAGCCATGTTGTTCCA 992
Query 623 TCGTCCGTAATATCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCAC 682
|||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCGTACGTAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCA- 1051
Query 683 AG-CGTTTTTCTCTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATT 741
|| |||||||| |||||||||||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 1052 AGACGTTTTTCCCTCTCTCCCAATTTTGGCATCTTCTTTAAGGTTTGTGGTCGCAGGATT 1111
Query 742 CCACAAGGCTTTAGCTGTCC-TG--GACCAT 769
||||||||||||||||| || || ||||||
Sbjct 1112 CCACAAGGCTTTAGCTGCCCATGATGACCAT 1142
Score = 412 bits (223), Expect = 3e-114
Identities = 281/309 (91%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 818 CTCCGCCACAAACAACACCACCTCCTCCACCAGCTACT-ACACCACCACTATCACCTCCT 876
|||| |||||||| || ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 462 CTCCTCCACAAACCACGCCACCTCCTCCACCAGC-AATCACACCACCACTATCACCTCCT 520
Query 877 CTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCCGAAATTTTAGCA 936
|||||||| | ||| |||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 521 CTGGTTGGAATATGTTCCAAGAATGATACCGAACTAAAGATATGTGCCGGAATTCTAGCA 580
Query 937 ATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCATCGTCCGTAAT 996
||||||| | || || |||| |||||||||||||| ||||||||||||||| |||| |||
Sbjct 581 ATTAGTGACGGTCTTCTAACCACTGGAAGAGCAGAACCATGTTGTTCCATCATCCGAAAT 640
Query 997 GTCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCACGGCGTTtctct 1056
|| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 641 GTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAATCGGTAGGAGCACCACGTTTTTCC 700
Query 1057 ctctctcCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATTCCACAAGGCTTT 1116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CTCTCTCCCAATTTCGGCATCTTCTTTAAAGTTTGTGGTCGTAGGATTCCACAAGGCTTT 760
Query 1117 AGCTG-CCC 1124
||||| |||
Sbjct 761 AGCTGTCCC 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5