BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329378
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22390.1 | Symbols: | F-box associated ubiquitination effec... 490 1e-137
> AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813425-11815133 REVERSE LENGTH=1408
Length=1408
Score = 490 bits (265), Expect = 1e-137
Identities = 877/1162 (75%), Gaps = 84/1162 (7%)
Strand=Plus/Plus
Query 1 ATGGC-GAATATTCCGATGGATATCATCACCGATCT-TTTCCTCCGACTAC-CAGCAACA 57
||||| |||| ||||| |||| |||||| ||| | ||| ||||| || | ||||||
Sbjct 60 ATGGCGGAAT-GTCCGACGGATCTCATCAACGAAATGTTT-CTCCGTCT-CAGAGCAACT 116
Query 58 ACTCTCGTCCGA-TATCGAATCCTCTCAAAACCATGCTTCTCTCTAATCGACAGTCCTAA 116
|| ||||| | | ||| |||||||||| || ||||||||| | ||||||||||| |
Sbjct 117 ACGCTCGT-AAAGTGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGA 175
Query 117 TTTCATCGAATCTCATCTCAATCAAACACTCCAATCCGGAGATCACCTCATGATCTTACT 176
||| || |||||||||| || | |||| || | ||||| || ||||||||||||||
Sbjct 176 GTTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACT 235
Query 177 CCGAGGACCTCGTCTTCT-CTGTACAGTAAACCTCGACTCACCGGATAAAGTCACCGACG 235
|||||||||||||||||| | | || || | || ||||| || || || ||| |||||
Sbjct 236 CCGAGGACCTCGTCTTCTAC-GCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACA 294
Query 236 TTGAACATCCTCTAAAAACCGGTGGTTTAACCGAAGTTTTCGGTTC-TTGTAACGGTTTA 294
| |||||| || || |||| ||||| || || ||||| ||||| || ||||||| |
Sbjct 295 TCCCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATT-TAACGGTGTC 353
Query 295 ATCGGTTTATCG-AATTCACCTACTGATATAGCGAT-TTTCAATCCTTCCACTCGGCAA- 351
|| || |||| | || || ||| |||| ||||||| ||| |||||||| ||| || ||
Sbjct 354 ATAGGGTTAT-GTAACTCTCCTGTTGATCTAGCGATCTTT-AATCCTTCGACTAGG-AAG 410
Query 352 ATCCACCGGTTACCGGCTGAATCGGTTGATTTTCCGGAAGGT-TCAACGACTCGTG-GTT 409
|| ||||| ||||| ||| | ||||||| || ||| || || | ||||||| | |
Sbjct 411 ATTCACCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATC-ACTCGTGAG-T 468
Query 410 ATGTGTTTTATGGATTT-GGTTATGATTCGGTTAACGATGA-TTATAAAGTTGTTAGAAT 467
|||||||||| || ||| ||||||||||| || |||||| || ||||||||| || ||
Sbjct 469 ATGTGTTTTACGG-TTTGGGTTATGATTCTGTGGGCGATGACTT-TAAAGTTGTGAGGAT 526
Query 468 GGTTCAGTGTAAAGGTGGTAAAGCTGATGAATTGGTTTTTGGATT-TCCT-TATG-AGAT 524
||||||||| ||| | ||||| | | || | ||| || ||| | || || |
Sbjct 527 TGTTCAGTGT-AAGCT--TAAAGAAGGTAAAAAGAAATTT-CCTTGCCCTGT-TGAAG-T 580
Query 525 TAAAGTTTTTAGCTTGAAGAAGAATTCATGGAAGAGAATCACAAGAGTTAT-TCCTGCGA 583
|||||||| ||||||||||||||||| ||||||||| | | |||| | | | |
Sbjct 581 CAAAGTTTTCAGCTTGAAGAAGAATTCGTGGAAGAGAGT---GTGTCTTATGTTC-GAGT 636
Query 584 TTCAG-TT-ATT-GTTTTAC-TTCTATTATCATCTCTTGTATCGTCGTGGATACGGTGT- 638
||||| || || | ||| | | |||||| ||||||||| ||||||||| || |||||
Sbjct 637 TTCAGATTCTTTGGATTT-CGTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTG 695
Query 639 TTTAGCTAGCAA-TAGTCTTCACTGGGTTCTACCTCGAAGACCTGGACTTATCGCCTTTA 697
|| | || ||| | |||||||||| || | |||||||| | ||| | || |||||||
Sbjct 696 GTT-GTTAACAACCA-TCTTCACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTA 753
Query 698 ACGCGATTAT-AAGATTTGATCTTG-ATACTGAGGA-ATTTGGGATTCTTGA-TTTTCCT 753
||||||| || || || |||||||| | |||| || | || ||| || | | ||| ||
Sbjct 754 ACGCGATAATCAA-ATATGATCTTGCCT-CTGATGACA-TT-GGAGTCCTCAGTTTCCCA 809
Query 754 GAGGATC-TTGC--TCATGAGAATATTGATATTGGTGTTTTAGATGGGTGTC-TTTGTTT 809
|||| | || | | | || || || ||||||||||| |||||||| || | |||||||
Sbjct 810 CAGGAGCTTTACATTGAAGATAACATGGATATTGGTGTGTTAGATGGCTG-CGTTTGTTT 868
Query 810 GATGTGTAACCATGAGTTTAGTTATGTTGATGTTTGGATTATGAAGGAGTATAAAG-TTG 868
||||||| || | |||| ||| |||||||||||||| || |||| |||||| | | ||
Sbjct 869 GATGTGTTACGACGAGTATAGCCATGTTGATGTTTGGGTTTTGAAAGAGTATGAGGATT- 927
Query 869 A-AGGGTCTTGGAGTAAGTTGTTTAGGGTACCGAAACCGA-AGAGTGTTGAGTCGTTTGA 926
| | ||||||| |||| ||| |||||| |||||||| | |||||||||| ||| ||||
Sbjct 928 ATA-AATCTTGGACTAAGCTGTATAGGGTGCCGAAACC-AGAGAGTGTTGAATCGGTTGA 985
Query 927 TTTTATGAGACCTCTGATTTATTCCAAGGAGAGGTA-TAAGATTTTGTTGGAGATAAATA 985
|| || ||||||||||| | ||||||||| ||| | ||||||||| ||||||| || |
Sbjct 986 GTTCATTAGACCTCTGATCTGTTCCAAGGACAGG-AGCAAGATTTTGCTGGAGATTAACA 1044
Query 986 AT---GCGAAGCTTGTGTGGTTTGATTT-GAAGAGTAAGAGGT-TTAGAAC-GCTTAGGA 1039
|| ||||| || ||||||||||||| ||| ||| ||| || ||| ||| || |||
Sbjct 1045 ATGCGGCGAATCTCATGTGGTTTGATTTGGAA-AGTCAGA-GTCTTACAACTGC--CGGA 1100
Query 1040 TAAAGGATTGTGATAGTTCGTATAGCGCGGAAC-TTCTTGTGAGTAGTCTTGTTTTGGGA 1098
| | || ||||||||||| | || ||| | || | || |||||||| ||||||||||||
Sbjct 1101 -ATA-GAGTGTGATAGTTCATTTACCGCAG-ACATCCTCGTGAGTAGCCTTGTTTTGGGA 1157
Query 1099 TGTAAAGGAGATCCTACTGAAG 1120
|||||||||||||||||| |||
Sbjct 1158 TGTAAAGGAGATCCTACTCAAG 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5