BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329380
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22390.1 | Symbols: | F-box associated ubiquitination effec... 1701 0.0
AT4G22420.1 | Symbols: | Ubiquitin-specific protease family C1... 128 1e-28
> AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813425-11815133 REVERSE LENGTH=1408
Length=1408
Score = 1701 bits (921), Expect = 0.0
Identities = 1122/1217 (92%), Gaps = 22/1217 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTCTC-GCAGCAACTAC 59
|||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||||
Sbjct 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAG-AGCAACTAC 118
Query 60 GCTTGT-ACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
||| || | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 119 GCTCGTAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 176
Query 118 TTCATCTCATCTCATCTCCGTCGCAGACTCGAAACAGGACAACATCTCATGATCTTACTC 177
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 177 TTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTC 236
Query 178 CGAGGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCACCGACATC 237
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 237 CGAGGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATC 296
Query 238 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCCTTTAACGGTGTCATC 297
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATA 356
Query 298 GGGTTATGCAACTCTCCTGTTGA-CATAGCGATTTTTAATCCTTCCACAAGGAAGATTCA 356
|||||||| |||||||||||||| | ||||||| ||||||||||| || |||||||||||
Sbjct 357 GGGTTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTAGGAAGATTCA 415
Query 357 TCGGTTACCGATTGAGCCACTTGATTTCCCAGAACGTCACATCACTCGTGAGTATGTGTT 416
|| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 CCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGTT 475
Query 417 TTACGGTTTGGGTTATGATTCTGTTAGCGATGACTTTAAAGTTGTGAGGA-TGCTTCAGT 475
|||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 476 TTACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTG-TTCAGT 534
Query 476 CTAAGCTTAAAGGAGGTAAAGAGAATTTTGGTTACCCTGTTGAAATCAAAGTTTTCAGCT 535
||||||||||| ||||||| |||| ||| || |||||||||| |||||||||||||||
Sbjct 535 GTAAGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGCT 594
Query 536 TGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGGTTCAGATTCTTTTCA-TT 594
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 595 TGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCTTTGGATTT 654
Query 595 CACTACTATTACCATCTCTTGCCTCGTCGTGGTTATGGCGTGCTAGCTAACAATCATCTT 654
| ||||||||||||||||||||||||||||| ||||| ||| | | |||||| ||||||
Sbjct 655 C-GTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATCTT 713
Query 655 CACTGGATTTTGCCTCGAAGGCAAGGAATCATTGCCTTTAACACGATAATCAGATTTGAT 714
||||||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||||
Sbjct 714 CACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATGAT 773
Query 715 CTTGCCTCTGATGACCTTGGAGTCCTCAGTTTCCCACGGGCTCTTTACACTGAAGATGAT 774
||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||| |
Sbjct 774 CTTGCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATAAC 833
Query 775 ATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTTTAGCCAT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 834 ATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCCAT 893
Query 835 GTTGATGTTTGGGTTTTGAAGGAGTATGAAGATGTA-AAATCTTGGACTAAGCTGTTTAG 893
|||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||
Sbjct 894 GTTGATGTTTGGGTTTTGAAAGAGTATGAGGAT-TATAAATCTTGGACTAAGCTGTATAG 952
Query 894 GGTGCCGAAACCAGAGAGTGTTGAATCGGTTGACTTCATGAGACCTCTGATCTATTCCAA 953
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 953 GGTGCCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCCAA 1012
Query 954 GGACAGGAGCAAGATTTTACTGGAGATTAACAATGCGAAGAATCTCATGTGGTTTGATTT 1013
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1013 GGACAGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTT 1072
Query 1014 GGAAAGTAAGAGTCTTACAACTGTTGGAATAGAGTGTGATAGTTCATTTACCGCAGACAT 1073
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 GGAAAGTCAGAGTCTTACAACTGCCGGAATAGAGTGTGATAGTTCATTTACCGCAGACAT 1132
Query 1074 CCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTGAAGCTCAGCGCAGGAA 1133
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1133 CCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAAGCTCAGCGCAGTAA 1192
Query 1134 AGATCA-AA--TGGTGCCGAAGAGTAAC-AAAAGG-G--ATGGTTTTCTGTCCAAGGGAT 1186
|||||| || || |||| ||||||| | |||||| | |||||||||||||||||||||
Sbjct 1193 AGATCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCAAGGGAT 1251
Query 1187 TCAAGCTGAAGCTATGA 1203
|||||||||||||||||
Sbjct 1252 TCAAGCTGAAGCTATGA 1268
> AT4G22420.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr4:11825614-11826432 REVERSE LENGTH=555
Length=555
Score = 128 bits (69), Expect = 1e-28
Identities = 104/120 (87%), Gaps = 6/120 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTC-TCGCAGCAACTAC 59
|||||||||||||||| ||||||||||||||| |||| ||||||| | | |||||||||
Sbjct 1 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTTAG-AGCAACTAC 59
Query 60 GCT-TGTACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
||| | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 60 GCTCAAAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5