BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329383

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22370.1 | Symbols:  | unknown protein; Has 12 Blast hits to...   621    1e-177


> AT4G22370.1 | Symbols:  | unknown protein; Has 12 Blast hits 
to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:11810005-11811214 REVERSE 
LENGTH=715
Length=715

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 374/393 (95%), Gaps = 0/393 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTTCTTCTACTGGTTGATCAAGAAGCTGGGAAAAGATATCAAGATTATTGTTAAA  60
            ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct  159  ATGGCTTTCTTCTACTGGTTGATCATGAAGCTGGGAAAGGATATCAAGATTATTGTTAAA  218

Query  61   CCAACGTTCAAAGATGGCATGACCGTTGGAGTTCAATGGCAACTCGAATGTGATAAGTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  219  CCAACGTTCAAAGATGGCATGACCGTTGGAGTTCAATGGCAACTCGAATGTGACAAGTCA  278

Query  121  CACATCCAATTGGGGAAGGGATTCAGTTTCCACATTTGCCATATGTACCAGGGAAAGCTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  279  CACATCCAATTGGGGAAGGGATTCAGTTTCCACATTTGCCATATGTACCAGGGAAAGCTA  338

Query  181  TTGATAAAGAATGTTGAGATGTTCATGGAGCCAATTTTCCACATAGAGCATCTAAGACTA  240
            |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  339  TTGATAAAGAATGTGGAGATGTTCATGGAACCAATTTTCCACATAGAGCACCTAAGACTA  398

Query  241  AGAACTATGGCGTTTGCAGTGAGTATGGCTGAGAAGATATTCACTTTGTTGAGACCAGGG  300
            |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||  
Sbjct  399  AGAACTATGGCGTTTGCAGTGAGTATTGCTGAGAAGATAGTCACTTTCTTGAGACAAGCA  458

Query  301  GAAAACACAAGGAGACAAGCAATGATACTCCTGCTACTTGCTCTTCTGCTGCTTGCTGCA  360
            ||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||
Sbjct  459  GAAAACACAAGGAGACAAGCAATGGCACTCCTGCTACTTGTTCTTCTGCTGCTTGCTGCA  518

Query  361  GCCGCTTTCTACTTCACACGACTGAGTTTCTGA  393
            |||||||||||| ||||||| ||||| ||||||
Sbjct  519  GCCGCTTTCTACGTCACACGTCTGAGATTCTGA  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5