BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329405
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-... 1219 0.0
> AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein | chr4:11728525-11730509
REVERSE LENGTH=1015
Length=1015
Score = 1219 bits (660), Expect = 0.0
Identities = 711/736 (97%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAAACTCGACCTGGTGTCGCCTCCAAAATTAAGCCTGGTAGGAAGGAGCTGGAC 60
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 280 ATGGCGAAAACTCGACCTGGTGTCGCCTCCAAAATTAAGACGGGAAGGAAGGAGCTGGAC 339
Query 61 TCTTATACCATCAAGGGCACCAACAAAGTTGTGAGAGCGGGAGATTGTGTGTTGATGCGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCTTATACCATCAAGGGCACCAACAAAGTTGTGAGAGCGGGAGATTGTGTGTTGATGCGC 399
Query 121 CCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGTTGAGAAGATTGAAGCTGATGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGTTGAGAAGATTGAAGCTGATGCG 459
Query 181 AGAAACAATGTGAAGGTGCACTGCCGATGGTATTACCGTCCTGAGGAGTCCCTTGGTGGT 240
|| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 460 AGGAACAATGTGAAGGTGCACTGTCGATGGTATTACCGCCCTGAGGAGTCACTTGGTGGT 519
Query 241 AGGAGACAATTTCATGGAGCCAAAGAGCTTTTCCTGTCTGACCATTTTGATGTTCAAAGC 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 520 AGGAGACAATTTCATGGAGCCAAAGAGCTTTTCTTGTCTGACCATTTTGATGTTCAAAGT 579
Query 301 GCACACACCATTGAGGGGAAATGCATCGTTCACACCTTCAAGAACTACACAAGGCTTGAA 360
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 580 GCACACACCATTGAGGGAAAATGCATTGTTCACACCTTCAAAAACTACACGAGGCTTGAA 639
Query 361 AACGTCGGGGCGGAGGATTATTATTGTAGATTTGAGTACAAGGCTGCTACTGGCGCGTTT 420
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 640 AACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGTACAAGGCTGCTACTGGCGCATTT 699
Query 421 ACCCCTGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ACCCCTGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTC 759
Query 481 ATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCATCCTGCGTGTGTTGGCATGACGATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 ATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCATCCTGCGTGTGTTGGCATGACGATT 819
Query 541 GAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCTGAATGCAGTTCTGATGACGATGTa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCTGAATGCAGTTCTGATGACGATGTC 879
Query 601 aaaaaaTCGCAGAACGGGTTTACTTCATCTCCAGCTGATGATGTTAAGGTCCGTTGGTCT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 880 AAAAAATCGCAGAATGGGTTTACTTCATCTCCAGCTGATGATGTTAAGGTCCGTTTGTCT 939
Query 661 TTCTTTAGTCATCTCCTATATAGATGTTCTATCACTT-TG-ATAACTTTAGTCTCTGCCC 718
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 940 CTCTTTAGTCATCTCCTATATAGATGTTCTATCACTTATTTATAACTTTAGTCTCTGCCC 999
Query 719 CTCTGTGTGCACCTGT 734
||||||||||||||||
Sbjct 1000 CTCTGTGTGCACCTGT 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5