BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329411
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding prot... 2621 0.0
AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY family transcrip... 651 0.0
AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcripti... 379 4e-104
> AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding protein
31 | chr4:11691378-11694392 REVERSE LENGTH=1778
Length=1778
Score = 2621 bits (1419), Expect = 0.0
Identities = 1552/1618 (96%), Gaps = 2/1618 (0%)
Strand=Plus/Plus
Query 1 ATGTTCCGGTTTCCAGTGAGTCTAGGTGGTTCACGTGACGAAGCCCGTCACGATCAGATC 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 159 ATGTTCCGGTTTCCAGTGAGTCTAGGCGGTTCACGTGACGAAGACCGTCACGATCAGATC 218
Query 61 ACACCGTTGGATGAGCATCGTGTGGTGGTTGATGAGGTTGACTTCTTCTCAGAGAAGAGA 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ACACCGTTGGATGACCATCGTGTGGTGGTTGATGAGGTTGACTTCTTCTCAGAGAAGAGA 278
Query 121 GATAGGGTTTCACGTGAGAACATCAACGACGAAGACGACGAAGCCAATAAGGCTCACGTC 180
|||||||||||||||||||||||||||||||| |||||||||| |||||||| || | ||
Sbjct 279 GATAGGGTTTCACGTGAGAACATCAACGACGACGACGACGAAGGCAATAAGGTTCTCATC 338
Query 181 AAAATGGAGAATTCACGAGTTGAAGAAAACGATCGTTCCAGAGATGTCATTATCGGGCTG 240
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 339 AAAATGGAGGGTTCACGAGTTGAAGAAAACGATCGTTCCAGAGATGTCAATATCGGTCTG 398
Query 241 AATCTTCTCACCGCGAATACGGGAAGCGATGAATCAACGGTGGATGATGGACTATCAATG 300
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 399 AATCTTCTGACCGCGAATACGGGAAGCGATGAGTCAACGGTGGATGATGGACTATCAATG 458
Query 301 GATATGGAAGATAAACGTGCAAAGATTGAGAACGCACAACTACAAGAAGAGCTCAAGAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GATATGGAAGATAAACGTGCAAAGATTGAGAACGCACAACTACAAGAAGAGCTCAAGAAG 518
Query 361 ATGAAAATAGAGAATCAAAGGCTAAGAGATATGTTGAACCAAGCGGCGACCAACTTCAAT 420
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 519 ATGAAAATAGAGAATCAAAGGCTAAGAGATATGTTGAGCCAAGCGACGACCAACTTCAAT 578
Query 421 GCCTTACAAATGCAACTTGTTACCGTTATGAGGCAACAAGAACAACGTAACTCCTCCCAA 480
||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |||
Sbjct 579 GCCTTACAAATGCAACTTGTTGCCGTCATGAGGCAACAAGAACAACGTAACTCTTCACAA 638
Query 481 GATCATCTCCTGGCT-ACGGAGGGCAGAGCGGAAGGAAGGAAACGGCAGGAACTGCAAAC 539
||||||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 639 GATCATCTCCTGGCTCA-GGAGAGCAAAGCAGAAGGAAGGAAACGGCAGGAACTGCAAAT 697
Query 540 CATGGTGCCAAGGCAGTTCATGGACCTCGGGCCGTCGTCTGGCGCGGCAGAGCATGGAGC 599
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 698 CATGGTGCCAAGGCAGTTCATGGACCTTGGGCCGTCGTCTGGAGCAGCAGAGCATGGAGC 757
Query 600 CGAAGTATCATCTGAAGAGAGGACAACGGTTCGTTCGGGTTCTCCTCCTTCGCTTCTAGA 659
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 758 CGAAGTGTCATCTGAAGAGAGGACAACGGTTCGTTCAGGTTCTCCTCCTTCGCTTCTAGA 817
Query 660 AAGTTCCAATCCCCGAGAGAACGGAAAGAGGTTGCTTGGAAGAGAAGAAAGCTCAGAGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AAGTTCCAATCCCCGAGAGAACGGAAAGAGGTTGCTTGGAAGAGAAGAAAGCTCAGAGGA 877
Query 720 ATCCGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTCTAG 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 ATCAGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTCTAG 937
Query 780 CAACAGCAATGGAAACAGAAACGGAAATGTTATTGATCAGTCGGCCGCAGAAGCCACCAT 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CAATAGCAATGGAAACAGAAACGGAAATGTTATTGATCAGTCGGCCGCAGAAGCCACCAT 997
Query 840 GCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGATGATAAGCGATGGATG 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 998 GCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCCATGATAAGCGATGGATG 1057
Query 900 TCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGTGTCCGCGAGCTTATTA 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1058 TCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGTGTCCGCGGGCTTATTA 1117
Query 960 TCGCTGCACAATGGCCGGTGGATGTCCTGTTCGCAAGCAAGTGCAACGTTGCGCAGAAGA 1019
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1118 TCGTTGCACAATGGCCGGTGGATGTCCAGTTCGCAAGCAAGTGCAGCGTTGCGCAGAAGA 1177
Query 1020 CAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATCCACTCCCACCAGCCGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATCCACTCCCACCAGCCGC 1237
Query 1080 TATGGCCATGGCCTCAACAACCACCGCAGCCGCAAGCATGCTCCTCTCGGGCTCAATGTC 1139
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1238 TACGGCCATGGCCTCAACAACCACCGCAGCTGCAAGCATGCTCCTCTCGGGCTCAATGTC 1297
Query 1140 GAGCCAAGACGGTTTAATGAACCCAACAAACCTCTTAGCTCGAGCCATCTTGCCTTGCTC 1199
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1298 GAGTCAAGACGGTTTAATGAACCCAACAAACCTCCTAGCTCGAGCTATCTTGCCTTGCTC 1357
Query 1200 CTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCCAACCATCACATTGGACCTCAC 1259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CTCAAGCATGGCTACAATCTCAGCCTCCGCACCATTCCCAACCATCACATTGGACCTCAC 1417
Query 1260 CAATTCACCCAACGGCAACAACCCTAATATGACCACTAATAACCCGTTGATGCAGTTCGC 1319
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CAATTCACCCAACGGTAACAACCCTAATATGACCACTAATAACCCGTTGATGCAGTTCGC 1477
Query 1320 TCAACGGCCTGGTTTCAACCCGGCGGTTTTGCCTCAAGTGGTCGGCCAAACTATGTTTTA 1379
||||||||| |||||||||||||| ||||||||||||||||| || ||| |||||| |
Sbjct 1478 TCAACGGCCCGGTTTCAACCCGGCAGTTTTGCCTCAAGTGGTTGGTCAAGCTATGTACAA 1537
Query 1380 TAACCAACAACAGTCCAAGTTTTCTGGTTTACAGTTACCGGCTCAGCCACTGCAGATCCC 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1538 TAACCAACAACAGTCCAAGTTTTCTGGTTTACAGTTACCGGCTCAGCCACTGCAGATCGC 1597
Query 1440 GACCACTTCCTCGGTGGCCGAGAGCGTCAGTGCTGCCAGTGCAGCGATTGCGTCCGATCC 1499
| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1598 GGCCACTTCCTCGGTGGCCGAGAGCGTTAGTGCTGCCAGTGCAGCAATTGCGTCCGATCC 1657
Query 1500 AAACTTTGCGGCGGCTCTAGCGGCAGCAATTACCTCCATTATGAACGGTTCCAGTCATCA 1559
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1658 AAACTTTGCGGCGGCTCTAGCGGCAGCGATCACGTCCATTATGAACGGTTCCAGTCATCA 1717
Query 1560 GAATAATAACACCAATAGTAATAATGTGGCTACAAGCAACGGTGACACTAGGCAATAA 1617
|||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||
Sbjct 1718 AAATAATAACACCAATAATAATAATGTGGCTACGAGCAACAATGACAGTAGGCAATAA 1775
> AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY family transcription
factor | chr4:2218379-2221114 FORWARD LENGTH=1588
Length=1588
Score = 651 bits (352), Expect = 0.0
Identities = 831/1052 (79%), Gaps = 74/1052 (7%)
Strand=Plus/Plus
Query 600 CGAAGTATCATCTGAAGAGAGGACAACGGTTCGTTCGGGTTCTCCTCCTTCGCTTCTAGA 659
|||||| || || || |||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 576 CGAAGTGTCGTCCGAGGAGAGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGA 635
Query 660 -AAGTTCCAATC-CCCGAGAGAACGGAAAGAG-GTTGCTTGGAAGAGAAGAAAGCTCAGA 716
|| | | | | | || | ||||||||||| | |||||| ||||||||||||| |
Sbjct 636 GAA-AT-CTAGCTCACGTCAAAACGGAAAGAGAG-TGCTTGTAAGAGAAGAAAGC-C--C 689
Query 717 GGAATCCGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTC 776
|||| |||| || |||| |||| |||||||||||||||| || ||||| || |||| ||
Sbjct 690 GGAAACCGAATCCAACGGCTGGAGAAACCCTAACAAAGTTCCTAAACACCATGCATCATC 749
Query 777 TAGCA---AC---AGCAATGG-A---AACA-G-AAACGGAAATGTTATTGATC-AGTCGG 823
|||| | ||||||| | || | | || | || || ||||| | || |||
Sbjct 750 CAGCATTTGCGGTGGCAATGGCAGTGAAAATGCAAGTAGCAAGGTCATTGAGCAAG-CGG 808
Query 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883
|||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||| | |
Sbjct 809 CCGCCGAAGCCACCATGCGTAAAGCCCGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCA 868
Query 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 869 TGTTAAGCGATGGATGTCAATGGAGAAAATACGGACAAAAAATGGCGAAAGGAAACCCGT 928
Query 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCGGTGGATGTCCTGTTCGCAAGCAAGTGC 1003
| || ||||||||||| || ||||||||||| | ||||||||||||||||||||||||||
Sbjct 929 GCCCTCGAGCTTATTACCGTTGCACAATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGC 988
Query 1004 AACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATC 1063
|||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||||||
Sbjct 989 AACGTTGCGCGGAAGATAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATC 1048
Query 1064 CACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGCAAGCATGCTCC 1123
|| | || || || |||||| |||||| ||||| || || ||||||||||||||||| |
Sbjct 1049 CATTACCTCCTGCGGCTATGAACATGGCTTCAACTACAACAGCAGCCGCAAGCATGCTTC 1108
Query 1124 TCTCGGGCTC-A--ATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCTCTTAGCTC 1180
|||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1109 TCTCAGGCTCCACCATGTCGAACCAAGACGGTTTAATGAACCCAACAAATCTCTTGGCTC 1168
Query 1181 GAGCCATCTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCCAA 1240
|| |||| || || || |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1169 GAACCATATTACCGTGTTCCTCAAGCATGGCTACTATCTCAGCCTCTGCACCATTCCCAA 1228
Query 1241 CCATCACATTGGACCTCACCA-ATTCACCCAACGGCAACAACCCTAATATGACCACTAAT 1299
|||| ||||| |||||||| | | ||||||||||| ||||| || || ||| | |
Sbjct 1229 CCATTACATTAGACCTCAC-AGAGTCACCCAACGGGAACAATCC-AA-----CCA--A-T 1278
Query 1300 AACCCGTTGATGCAGTTCGCTCAACGGCCTGGTTTC----A----ACCCGG-CGGTTTTG 1350
|||||| ||||||| ||| |||||||| ||||||| | | || ||||||||
Sbjct 1279 AACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTGGTGGAGTTGAACCAATCGGTTTTG 1338
Query 1351 CCTCA-AGTGGTCGGCCAAACTATGTTTTATAACCAACAACAGTCCAAGTTTTCTGGTTT 1409
||||| | || | || || || ||| || |||||||| ||| |||||||| |||||
Sbjct 1339 CCTCATA-TGATGGGTCAGGCTTTGTACTACAACCAACA---GTCTAAGTTTTCGGGTTT 1394
Query 1410 ACAGT-TACCGGCTCAGCCACTGCAGATCCCGACCACTTCCTCGGTGGCCGAGAGCGTCA 1468
||| | | ||| ||||||| || | | | | | | |||| |||| || |
Sbjct 1395 ACA-TATGCCGTCTCAGCCGCTA-A-A-C--G-C---T-----GGTG----AGAGTGTTA 1435
Query 1469 GTGCTGCCAGTGCAGCGATTGCGTCCGATCCAAACTTTGCGGCGGCTCTAGCGGCAGCAA 1528
| || || | ||| || || || ||| |||| |||||||| ||||||||||| ||||| |
Sbjct 1436 GCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCCA 1495
Query 1529 TTACCTCCATTATGAACGGTTC---CAGTCATCAGAATAATAACACCAATAGTAATAATG 1585
| || || ||||| |||||||| || ||| |||||| |||| ||||| | |||||
Sbjct 1496 TAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAATG 1555
Query 1586 TGGCTACAAGCAACGGTGACACTAGGCAATAA 1617
| | || ||||||| ||||| ||||||||||
Sbjct 1556 TTACAACGAGCAACGTTGACAATAGGCAATAA 1587
> AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcription
factor | chr1:23016683-23019279 REVERSE LENGTH=1990
Length=1990
Score = 379 bits (205), Expect = 4e-104
Identities = 370/450 (82%), Gaps = 10/450 (2%)
Strand=Plus/Plus
Query 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883
|||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| |||
Sbjct 993 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGA 1052
Query 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943
|||||||||||||||||||||||||||| || || || || ||||| ||||| || || |
Sbjct 1053 TGATAAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTT 1112
Query 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCG-GTGGATGTCCTGTTCGCAAGCAAGTG 1002
||||||| || ||||| |||||||| |||||| | || ||||| |||||||| |||||
Sbjct 1113 GTCCGCGGGCATATTACCGCTGCACGATGGCCACG-GGCTGTCCCGTTCGCAAACAAGTT 1171
Query 1003 CAACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1062
||||||||||| ||||||||||| ||||| || || |||||||| |||||||| ||||||
Sbjct 1172 CAACGTTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCAT 1231
Query 1063 CCACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGC-AAGCATGCT 1121
|| | || |||||||| | |||||||| || || ||||| || || || || |||| |
Sbjct 1232 CCGTTGCCGCCAGCCGCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTT 1290
Query 1122 CCTCTC-GGGCTCAATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCT-CTTAGCT 1179
|| || ||| |||||||| || || ||||| | |||||||| ||||| | || ||||
Sbjct 1291 GCTATCCGGG-TCAATGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACT-AGCT 1348
Query 1180 CGAGCCAT-CTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCC 1238
| || | ||| ||||||||| |||||||||| ||||||||||||||||| || || ||
Sbjct 1349 AGGGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCC 1407
Query 1239 AACCATCACATTGGACCTCACCAATTCACC 1268
|||| ||||||| ||||||||| | |||||
Sbjct 1408 AACCGTCACATTAGACCTCACCCACTCACC 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5