BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329423
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21910.4 | Symbols: | MATE efflux family protein | chr4:116... 2320 0.0
AT4G21903.2 | Symbols: | MATE efflux family protein | chr4:116... 1526 0.0
> AT4G21910.4 | Symbols: | MATE efflux family protein | chr4:11625443-11629417
REVERSE LENGTH=2013
Length=2013
Score = 2320 bits (1256), Expect = 0.0
Identities = 1400/1470 (95%), Gaps = 8/1470 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGGCTTAGTGAAACCACGAATCTAGCCGATCTCCGGCGACCATTGGTGGTTCCA 60
||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 165 ATGGAAGTGCCTAGTGAAACCACGAATTTAGCCGATCTCCGGCGACCATTGGTGGTTCCG 224
Query 61 GTTGTCTCGGAGCAAAAACCTCCGGC-G--GAC-G--TCGGACTAGAGAGTGTTTTAACG 114
||||||||||||| ||||||||||| | | | | |||||||||||||||||||||||
Sbjct 225 GTTGTCTCGGAGCGTAAACCTCCGGCAGACGTCGGACTCGGACTAGAGAGTGTTTTAACG 284
Query 115 GAGCGTAACCTTCCGTACCGGAGGCGCGTATACTTAGGGGCGTGCATAGAGATGAAACTA 174
||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 285 GAGCGTAGCCTTCCGTACCGGAGGCGCGTGTACTTAGGGGCATGCATAGAGATGAAGCTA 344
Query 175 CTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATT 404
Query 235 TCCGCTCGTATCTTCGCCGGGCATCTCGGTAAAAATGAGCTCGCCGCCGCGTCCATCGCA 294
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 405 TCCGCTCGGATCTTCGCCGGACATCTCGGTAAAAATGAGCTCGCCGCCGCGTCCATCGGA 464
Query 295 AACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACA 524
Query 355 CTATGTGGGCAAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGA 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CTATGTGGACAAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGA 584
Query 415 GCAACTATAGTCCTCGCTCTTGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTAC 474
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCAACAATAGTCCTCGCTCTAGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTAC 644
Query 475 CCGATTCTAATCCTACTAGGGGAGCCCAAAACGGTATCGTACATGGGATCCAAGTACATC 534
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 645 CCTATTCTAATCCTACTAGGGGAACCCAAAACGGTGTCGTACATGGGATCCAAATACATC 704
Query 535 GCCGGACTCATTCCTCAAATCTTCGCTTACGCCGTCAACTTCACAGCCCAAAAATTCCTC 594
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 705 GCCGGGCTCATCCCTCAAATCTTCGCTTACGCCGTCAACTTCACGGCCCAAAAGTTCCTC 764
Query 595 CAGGCCCAAAGCGTGGTGGCCCCTAGCGCGTTCATCTCAGCCGCCGCCCTCATCCTTCAG 654
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 765 CAGGCCCAAAGCGTGGTTGCCCCGAGCGCCTTCATCTCAGCCGCCGCCCTCATCCTCCAG 824
Query 655 ATCTTGCTGACGTGGACCACCGTTTATGTAATGGACATGGGCCTTATGGGCATAGCTTAT 714
|| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 825 ATATTGTTGACGTGGATCACCGTTTATGTAATGGACATGGGCTTTATGGGCATAGCTTAT 884
Query 715 GTTCTTACTATTACTTGGTGGGTCATTGTTGGATCCCAATGTTTTTACATTGCAGTTAGT 774
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 885 GTTCTTACAATTTCTTGGTGGGTCATTGTTGGATCCCAGTGTTTTTACATTGCGGTTAGT 944
Query 775 CCCAAGTTCAGACACACGTGGACTGGTCTTAGCTGGAGATCGTTCCAAGGTCTTTGGAGC 834
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 945 CCCAAGTTTAGACACACGTGGACTGGTCTTAGCTGGAGATCGCTCCAAGGTCTTTGGAGC 1004
Query 835 TTCTTTAAACTCTCTGCTGGCTCCGCCGTTATGATTTGTCTGGAAATGTGGTATTCGCAG 894
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1005 TTCTTTAAACTCTCTGCTGGCTCAGCTGTTATGATTTGTCTGGAAATGTGGTATTCGCAG 1064
Query 895 ATTCTTGTTCTTCTTGCTGGTTTGCTC-AAAGATCCTGCTCGCTCTTTAGATTCTCTCTC 953
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| ||
Sbjct 1065 ATTCTTGTTCTTCTTGCTGGTTTGCTCGAAA-ATCCTGCTCGCTCTCTAGATTCTCTTTC 1123
Query 954 CATCTGTATGTCGATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGT 1013
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1124 CATCTGTATGTCAATTTCAGCATTATCATTCATGGTCTCTGTCGGCTTTAATGCTGCTGT 1183
Query 1014 AAGTGTACGAACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATTGTTCTCTAC 1073
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1184 AAGTGTACGGACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATGGTTCTCTAC 1243
Query 1074 ATGGACGGCAACTTTTGTTTCCTTTGTGATTTCCGTGACGGAGGCCCTCGCCGTGATTTG 1133
||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1244 ATGGACGGCGACTTTTGTATCCTTCGTGATCTCCGTGACGGAAGCCCTCGCCGTGATTTG 1303
Query 1134 GTTTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GTTTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTC 1363
Query 1194 TGACCTCTGTCCTTTTCTAGCCATCACCATCATTCTCAACGGAATCCAACCTGTCTTGTC 1253
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1364 TGACCTCTGTCCTTTTCTTGCCATCACCATCATTCTCAACGGAATTCAACCTGTCTTGTC 1423
Query 1254 CGGAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAACGTTGGTTGTTA 1313
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1424 CGGAGTGGCAGTGGGATGTGGATGGCAAACATACGTGGCATATGTGAATGTTGGTTGTTA 1483
Query 1314 CTATGTTGTTGGTATTCCCGTTGGGTGTATCCTCGGCTTCGCTTTCGATTTTCAAGCCAA 1373
||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1484 CTACGTTGTTGGTATTCCGGTTGGGTGTATTCTCGGCTTCACTTTCGATTTTCAAGCCAA 1543
Query 1374 GGGAATATGGACCGGGATGATTGGAGGTACCTTCATGCAAACACTCATTTTACTTTACGT 1433
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1544 GGGAATATGGACCGGGATGATTGGAGGTACCCTCATGCAAACACTCATTTTACTTTACGT 1603
Query 1434 CACGTACCGAACAGATTGGGATAAAGAGGT 1463
||||||||||||||||||||||||||||||
Sbjct 1604 CACGTACCGAACAGATTGGGATAAAGAGGT 1633
Score = 78.7 bits (42), Expect = 2e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1471 GCGAGAAAACGTTTGGATATGTGGGACGACAAGAAGGAGCCTCTCCACAGCTAG 1524
||||| |||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1661 GCGAGGAAACGTTTGGATCTGTGGGACGACAAGAAGGAGCCTCTCCAAAACTAG 1714
> AT4G21903.2 | Symbols: | MATE efflux family protein | chr4:11620998-11623797
REVERSE LENGTH=1765
Length=1765
Score = 1526 bits (826), Expect = 0.0
Identities = 1219/1409 (87%), Gaps = 26/1409 (2%)
Strand=Plus/Plus
Query 68 CGGAGCAA-AAACCTCCGGCGGACGTCGGACTAGAGAGTGTTTTAACGGAGCGTAACCTT 126
||||| || |||| |||| || ||||| || ||||| || ||||||||| || | |||
Sbjct 121 CGGAG-AAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGT-AGCTT 178
Query 127 -CCGTACCGGAGGCGCGTATACTTAGGGGCGTGCATAGAGATGAAACTACTTTTCCGGTT 185
|| |||||||||||||| |||||||| |||||||||| | ||||||||| |||||||
Sbjct 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238
Query 186 GGCACTTCCGGCGATACTTGTCTATTTAGTCAACAGCGGAATGGGTATTTCCGCTCGTAT 245
||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298
Query 246 CTTCGCCGGGCATCTCGGTA-AAAATGAGCTCGCCGCCGCGTCCATCGCAAACAGCTGCT 304
||||||||| ||||| || | | | | || ||||| || ||||||| ||||||| |||
Sbjct 299 CTTCGCCGGACATCTAGGCAGTACA-CAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357
Query 305 TCAGTCTCGTCTATGGCCTCATGTTAGGTATGGGCAGTGCAGTCGAAACACTATGTGGGC 364
|||| ||||| |||| ||||||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417
Query 365 AAGCCTATGGAGCCCATCGTTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACTATAG 424
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| || |
Sbjct 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477
Query 425 TCCTCGCTCTTGTTGGCTTGCCCATGACATTACTATACACCTTCTCGTACCCGATTCTAA 484
|||| ||||| |||||||| ||||||||| |||||||||| || ||||||||||||||
Sbjct 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537
Query 485 TCCTAC-TAGGGGAGCCCAAAACGGTATCGTACATGGGATC-CAAGTACATCGCCGGACT 542
|||| | |||| ||||| ||||||||||| ||||||||||| | ||||||||||||||
Sbjct 538 TCCT-CTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTA-TACATCGCCGGACT 595
Query 543 CATTCCTCAAATCTTCGCTTACGCCGTCAACTTCACAGCCCAAAAATTCCTCCAGGCCCA 602
||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 596 CATCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCA 655
Query 603 AAGCGTGGTGGCCCCTAGCGCGTTCATCTCAGCCGCCGCCCTCATCCTTCAGATCTTGCT 662
|||||| |||||||| || |||| ||||||||||||||||||| |||| ||||| | |||
Sbjct 656 AAGCGTAGTGGCCCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCT 715
Query 663 GACGTGGACCACCGTTTATGTAAT-GGACATGGGCCTTATGGGCATAGCTTATGTTCTTA 721
|||||||| ||||||||| | ||| || || ||||| ||||| ||||||||||||||||
Sbjct 716 GACGTGGATCACCGTTTACGCAATGGGCCA-AGGCCTCATGGGTATAGCTTATGTTCTTA 774
Query 722 CTAT-TACTTGGTGGGTCATTGTTGGATCCC-AATGTTTTTACATTGCAGTTAGTCCCAA 779
|||| | |||||||| |||| |||||| ||| || | |||||| || | ||| | ||
Sbjct 775 CTATCT-CTTGGTGGTTCATAGTTGGAGCCCAAACG-TTTTACGTTATAACTAG-CGTAA 831
Query 780 -GTTCAGACACACGTGGACTGGTCTTAGCTGGAGATCGTTCCAAGGTCTTTGGAGCTTCT 838
||| | | |||| ||||||||| ||||||||| |||||| || ||||||||||||||||
Sbjct 832 GGTTTAAAGACACTTGGACTGGTTTTAGCTGGAAATCGTTACATGGTCTTTGGAGCTTCT 891
Query 839 TTAAACTCTCTGCTGGCTCCGCCGTTATGATTTGTCTGGAAATGTGGTATTCGCAGATTC 898
||||||| ||||||||||| || || ||||| ||| ||||| |||||||| | |||||||
Sbjct 892 TTAAACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTC 951
Query 899 TTGTTCTTCTTGCTGGTTTGCTCAAAGATCCTGCTCGCTCTTTAGATTCTCTCTCCATCT 958
| |||||||| ||||||||||| ||||||||||| | |||| |||||||||| || ||||
Sbjct 952 TGGTTCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCT 1011
Query 959 GTATGTCGATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTG 1018
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1012 GTATGTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTG 1071
Query 1019 TACGAACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCAGCATTGTTCTCTACATGGA 1078
|||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1072 TACGTACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGA 1131
Query 1079 CGGCAACTTTTGTTTCCTTTGTGATTTCCGTGACG--GAGGCCCTCGCCGTGATTTG-GT 1135
| || |||||||| ||||| ||||| ||||| || ||||| || | ||||| ||| ||
Sbjct 1132 CAGCGACTTTTGTATCCTTCGTGATCTCCGT--CGTAGAGGCACTTGTCGTGA-TTGCGT 1188
Query 1136 TTCGTGATTACGTTAGCTACATTTTCACGGAGGATGCTGACGTGGCTAAAGCCGTCTCTG 1195
||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1189 CACGTGACAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTG 1248
Query 1196 ACCTCTGTCCTTTTCTAGCCATCACCATCATTCTCAACGGAATCCAACCTGTCTTGTCCG 1255
|||| ||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1249 ACCTATGTCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCG 1308
Query 1256 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAACGTTGGTTGTTACT 1315
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1309 GAGTGGCAGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACT 1368
Query 1316 ATGTTGTTGGTATTCCCGTTGGGTGTATCCTCGGCTTCGCTTTCGATTTTCAAGCCAAGG 1375
|| | ||||||||||| |||| ||||| ||||||||| ||||| |||||||||| ||||
Sbjct 1369 ATATAGTTGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGG 1428
Query 1376 GAATATGGACCGGGATGATTGGAGGTACCTTCATGCAAACACTCATTTTACTTTACGTCA 1435
| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||
Sbjct 1429 GGATATGGACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCA 1488
Query 1436 CGTACCGAA-CAGATTGGGATAAAGAGGT 1463
|||| | || |||||||||||||||||||
Sbjct 1489 CGTATC-AAGCAGATTGGGATAAAGAGGT 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5