BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329436
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21770.1 | Symbols: | Pseudouridine synthase family protein... 2239 0.0
> AT4G21770.1 | Symbols: | Pseudouridine synthase family protein
| chr4:11563517-11566357 REVERSE LENGTH=1801
Length=1801
Score = 2239 bits (1212), Expect = 0.0
Identities = 1361/1432 (95%), Gaps = 14/1432 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGCCGGCGTTAACCGGCGGTTACCGGAACCTCACAGCGCCGGTATCTCTCCTG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 13 ATGGCTTCGCCGGCGTTAACCGGCGGTTACCGGAACCTCACTGCGCCGGTATCTCTCCTG 72
Query 61 CGCACTCTAGCATCCACCTGTATCACTACGACTTTATTTCGTACCAACAAATATCAATAC 120
|| ||| |||| |||||| || ||||||| | || |||||| ||||| || | | ||
Sbjct 73 CGTACTTTAGCGTCCACCCGTGTCACTACTCCATTGTTTCGTTCCAAC-AA-A-C---AC 126
Query 121 AAAATCCCTCCACGTTTCATTTCTTCTCCAAAGAGATTCACTTGCTTGTCCTTACTTAAA 180
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 ----T--CTCCACGTTTCATTTCTTCTCCAAAGAGATTCACTTGCTTGTCCTTACTCAAA 180
Query 181 ACCGATTCTCAAAATCAAACCACACTCTCCTCTTCTTCCACTTCTGGATACCCTGAATAC 240
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 181 ACCGATTCTCAAAATCAAACCACACTCTCTTCTTCTTCCAATTCTGGATACCATGAATAC 240
Query 241 AATCGATTGATGCCATGTCCTGCACATAATCTTCCACCAAGAATTGAGCATATGGTTGTT 300
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 241 AATCGATTGATGCCATGTCCTGCATATAATCTTCCACCAAGAATTGAACATATGGTTGTG 300
Query 301 TTAGAAGACGACGTTCTTGTTTCTGAGTTTATCTCTAAAGAATTAGATCTTCCTCCTTTA 360
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TTAGAAGACGACGTTCTTGTATCTGAGTTTATCTCTAAACAATTAGATCTTCCTCCTTTA 360
Query 361 TATGTTTCAGATCTTATTCGATTTGGAGCTGTACATTACGCTCTTGTATGTCCTAAACCT 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATGTTGCAGATCTTATTCGATTTGGAGCTGTACATTACGCTCTTGTATGTCCTAAACCT 420
Query 421 CCACCAACTGCGACTCCTGAGCAAATTGA-ACTCTTTGAAGAAGTAACCTGTCCTTCTGT 479
||||||||||||||||||||| ||||| | ||| |||||||||||||||| |||||||||
Sbjct 421 CCACCAACTGCGACTCCTGAGGAAATT-ATACTGTTTGAAGAAGTAACCTCTCCTTCTGT 479
Query 480 GCTAAAGAAGAGATCTTCTATTAAAGGAAAAACTGTTAGAGAAGCTCAGAAAACGTTTCG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTAAAGAAGAGATCTTCTATTAAAGGAAAAACTGTTAGAGAAGCTCAGAAAACGTTTCG 539
Query 540 TGTGACTCATACCAATCAGTATGCTGAAGCTGGGACTTATTTACGTGTTCATGTTCACCC 599
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 TGTGACTCATACCAATCAGTATGCTGAAGCTGGAACTTATTTGCGTGTTCATGTTCACCC 599
Query 600 GAAACGTTCTCCAAGGTGTTATGAAATCGATTGGAAGTCGCGGATTGTTGCTGTGACTGA 659
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 600 GAAACGTTCTCCAAGGTGTTATGAAATTGATTGGAAGTCACGGATTGTTGCTGTGACTGA 659
Query 660 CTCTTATGTCATTTTGGATAAACCTGCCGGGACTACGGTTGGAGGCACGACGGATAACAT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTCTTATGTCATTTTGGATAAACCTGCCGGGACTACGGTTGGGGGCACGACGGATAACAT 719
Query 720 CGAAGAGAGCTGTGCCACATTTGCCTCACGTGCATTGAATTTACCAGAACCGCTGAAAAC 779
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 720 CGAAGAGAGCTGTGCTACATTTGCCTCACGTGCATTGGATTTACCAGAACCACTGAAAAC 779
Query 780 AACGCATCAGATTGATAACTGTACAGAAGGCTGTGTTGTCTTTGCTAGAACAAAAGAGTA 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AACGCATCAGATTGATAACTGTACAGAAGGCTGTGTCGTCTTTGCTAGAACAAAAGAGTA 839
Query 840 CTGCTCGGTTTTCCACACGAAAATAAGAAATAAAGAAGTGAAGAAACTATATCGTGCTCT 899
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTGCTCGGTCTTCCACACAAAAATAAGAAATAAAGAAGTGAAGAAACTATATCGTGCTCT 899
Query 900 TGCTGCGGCACCTCTTCCCACTGGAATTATCTCACATTATATGCGCCCAAAAAATATGGC 959
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCTGCGGCACCTCTTCCCATTGGAATTATCTCACATTATATGCGCCCAAAAAATATGGC 959
Query 960 TCCAAGACTCGTATCCGAAGATTCGATTAAAGGCTGGCACTTGTGTCAACTTGAGGTTTT 1019
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 960 TCCAAGACTCGTAGCCGAAGATTCAATTCAAGGCTGGCACTTGTGTCAACTTGAGGTTTT 1019
Query 1020 AGAATGTAAGAAGATTCCTTGGCCCGATGCAGCTACTGAGAAGAAACACGATATTGAAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAATGTAAGAAGATTCCTTGGCCCGATGCAGCTACTGAGAAGAAACACGATATTGAAGA 1079
Query 1080 CTGTGGATGGACTTCAAAAGAATTTGCTTATGAGTGTACAATAAACCTCTTAACAGGCAA 1139
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1080 CTGTGGATGGACTTCAAAAGAGTTTGCTTATGAGTGTACAATAAACCTTTTAACAGGCAA 1139
Query 1140 GACTCACCAGATCCGGGCCCAGCTTGCAGCTTGTGGGGCACCGTTGGTTGGTGATTCTAT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GACTCACCAGATCCGGGCCCAGCTTGCAGCTTGTGGGGCACCGTTGGTTGGTGACTCTAT 1199
Query 1200 GTACGTGCCAGCAGCGATAGCAGAAATGGTGAATCCTGAGATCAACCTGTATGGGAAATC 1259
|||| ||||||||||||| |||||||||| ||||||||| | ||||| |||||||||| |
Sbjct 1200 GTACATGCCAGCAGCGATTGCAGAAATGGGGAATCCTGATACCAACCCGTATGGGAAAGC 1259
Query 1260 AAAGAAACATTACACAATGGAGGAGAACGATAAGGACACTGCTGTTGCTGAATGGATTGA 1319
|||||||||||||||||||||||||||| | ||||| || |||||||| |||||||||||
Sbjct 1260 AAAGAAACATTACACAATGGAGGAGAACCAAAAGGAAACCGCTGTTGCCGAATGGATTGA 1319
Query 1320 TAGGCATGGGAAGGAACCGAGGGTAGGAATCGGTCTTCAAGCTTGTCAAATCTCATGGGA 1379
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAGACATGGCAAGGAACCGAGGGTAGGAATCGGTCTTCAAGCTTGTCAAATCTCATGGGA 1379
Query 1380 CGATGATGATGGCGAGCACTTCTATGAAGCTGGGACTCCATGGTGGAGATGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGATGATGATGGCGAGCACTTCTATGAAGCTGGGACTCCATGGTGGAGATGA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5