BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329467
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21420.1 | Symbols: | transposable element gene | chr4:1140... 942 0.0
> AT4G21420.1 | Symbols: | transposable element gene | chr4:11405812-11407512
FORWARD LENGTH=1701
Length=1701
Score = 942 bits (510), Expect = 0.0
Identities = 574/606 (95%), Gaps = 0/606 (0%)
Strand=Plus/Plus
Query 1 ATGTTAGCTTTCACAAAGATGGCTAGATTCCAAGGGTCGCTGCAATCCCGGGCTACCTTA 60
|||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||
Sbjct 1096 ATGTTAGCTTTCACAAAGATTGCTAGATTCCAAGGGTTGCTGCAAACCCGGGCTACTTTA 1155
Query 61 TTGTTAATCCGAAACTACCATAAACAGCCTGTCAAAGTTGTGTGGAAGAAACCCCAAATT 120
|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1156 TTGTTAATCCGAGACTACCACAAACAGCCTGTCAAAGTTGTGTGGAAGAAACCTGAAAAT 1215
Query 121 GGATGGATAAAGCTAAACTTTGACGGATCCAGAGGAAGAGAAGGACAAGCCAGCATTGGT 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GGACGGATAAAGCTAAACTTTGACGGATCCAGAGGAAGAGAAGGACAAGCCAGCATTGGA 1275
Query 181 GGGATATTCAGAAACCACAAAGCTGAGTTCCTTCTTGGATACTCAGAATCTATAGGGGAA 240
||| ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1276 GGGGTATTCAGAAACCACAAAGCCGAGTTCCTTCTTGGGTACTCAGAATCCATAGGGGAA 1335
Query 241 GCCACAAGCACCATGGCAGAATTCGCAGCACTCAAAAGAGGGCTCGAGCTGGTTCTAGAG 300
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1336 GCCACAAGCACCATGGCAGAATTCGCAGCCCTCAAAAGAGGGCTCGAGCTGGCTCTAGAG 1395
Query 301 AACGGGTGGACGGATATATGGCTCGAAGGAGACGCCAAGATCATAATGGATATAATCTCC 360
||||||| ||||||| ||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1396 AACGGGTTGACGGATCTATGGCTTGAAGGAGATGCCAAGATCATAATGGATATCATCTCG 1455
Query 361 AAGAGAGGGAGACTGAGATGTGAAAGGACAAATAAGCATGTGAATTACATCAATGTGGTT 420
| ||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1456 AGGAGGGGGAGATTGAGATGTGAAAAGACAAATAAGCATGTGAATTACATCAAAGTGGTT 1515
Query 421 ATGCCTGGGCTGAGCAACTGCGTGTTGAGCCATGTTTACAGAGAAGGGAATCGAGTCGCT 480
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1516 ATGCCTGAGCTGAACAACTGCGTGTTGAGCCATGTTTACAGAGAAGGAAATCGAGTCGCT 1575
Query 481 GATAAACTGGCTAAGTTAGGACATCAGTTTCAGGATCCTAAAGTCTGGAGGGTTCAGCCT 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 GATAAATTGGCTAAGTTAGGACATCAGTTTCAGGATCCTAAAGTCTGGAGGGTTCAGCCT 1635
Query 541 CCGGAGATAGTTCTACCAATTATGCATGACGATGCAAAAGGTAAGATTGTTCTTAGAACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CCGGAGATAGTTCTACCAATTATGCATGACGATGCAAAAGGTAAGATTGTTCTTAGAACA 1695
Query 601 AAATGA 606
||||||
Sbjct 1696 AAATGA 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5