BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329479
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21220.1 | Symbols: | Trimeric LpxA-like enzymes superfamil... 1284 0.0
AT4G05210.1 | Symbols: | Trimeric LpxA-like enzymes superfamil... 564 6e-160
> AT4G21220.1 | Symbols: | Trimeric LpxA-like enzymes superfamily
protein | chr4:11316828-11319067 REVERSE LENGTH=1065
Length=1065
Score = 1284 bits (695), Expect = 0.0
Identities = 844/915 (92%), Gaps = 13/915 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTACTCTTGGGAGATT-TGCCTCCAATTCTATACGTAATTCTGTTCAGGGAAT 59
||||||||||||||| ||||||| | |||||| |||||| |||||||| |||| |||||
Sbjct 1 ATGGCGGCTACTCTTTGGAGATTAT-ACTCCAAATCTATATGTAATTCTCTTCAAGGAAT 59
Query 60 CACCTTGAACAAACCCTTTATCCGGAAACAGCTTCTTCTTCCTTGGAGTTCTCGAAGTTT 119
|| |||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||
Sbjct 60 CATCTTGAACAAACCCTTTATCCAGAAACAGCTTCTTCTTTCTTCGAGAACTCGAAGTTT 119
Query 120 ATCTTTTTGCTTAGATTATCAGTTTGGCTCTGCGACTGCTGAGGTTTACTCAAATGCAGG 179
|||||||| || ||||| |||||||||||||||||| |||||||||| |||||| ||||
Sbjct 120 ATCTTTTTCCTCAGATTCTCAGTTTGGCTCTGCGACAGCTGAGGTTTGTTCAAATACAGG 179
Query 180 GTCT-GATACCGGTGGTGG---TATTG-TCAGTGAAGGGTTTCTAAGAT-GGAGAAATGG 233
|| | | ||||||||||| ||||| | || ||||| ||||| |||| ||| ||||||
Sbjct 180 GT-TAAAGACCGGTGGTGGTATTATTGTTAAG-GAAGGATTTCTTAGATGGGA-AAATGG 236
Query 234 AGGAGGGACATGTCATAGCTCGGCTCTAATTGATTCTTCAGCTTTGGTTGAGTTTGGTGC 293
|||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||
Sbjct 237 AGGAGGGACATGTCATAGCTCGGCTCAAATTTATTCCTCGGCTTTGGTTGAGTTTGGTGC 296
Query 294 GGTAGTTCATGAAAAAGCTGTCTTAGGTGCGGAGGTTCATGTAGGATCCGGGACTGTAAT 353
|| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 297 AGTGGTTCATGAAAAAGCGGTCTTAGGTGCAGAGGTTCATGTAGGATCTGGTACTGTGAT 356
Query 354 TGGACCATCAGTTCAAATCAGTCCTTCCACAAGAATCGGATATAACGTTTCAATCAGCAA 413
||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 TGGACCATCAGTTGACATTGGTCCTTCCACAAGAATCGGATATAATGTTTCAATCAGCAA 416
Query 414 CTGTAGTATTGGTGATTCTTGTGTTATCCACAATGGAGTCTGCATAGGTCAAGATGG-TT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 CTGTAGTATTGGTGATTCTTGTGTTATCCACAATGGAGTCTGCATAGGTCAAGATGGCTT 476
Query 473 TCGGTTTTTACGTTGATGAACATGGAAACATGGTGAAGAAGCCTCAAAAATTAAACGTAA 532
| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 T-GGTTTCTACGTTGATGAACATGGAAACATGGTGAAGAAGCCTCAAACTTTAAACGTAA 535
Query 533 AGATAGGGAATCGTGTTGAAATTGGAGTAAATACTTGCATTGATCGAGGCAGCTGGAGAG 592
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 536 AGATAGGGAATCGTGTCGAAATCGGAGCAAATACTTGCATTGATCGAGGCAGCTGGAGAG 595
Query 593 ATACCGTAATCGAAGATGATACTAAGATAGACAACTTAGTGCAGATAGGTCACAATGTGA 652
| || || |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 596 AAACAGTGATCGAAGATGATACTAAGATAGACAATTTAGTGCAGATAGGCCACAATGTGA 655
Query 653 TCATAGGAAAGTGTTGCTTGCTTTGTGGTCAAGTAGGCATCGCTGGTTCAGTAACAATTG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 TCATAGGAAAGTGTTGCTTGCTTTGTGGTCAAGTAGGCATCGCTGGTTCAGTAACGATTG 715
Query 713 GTGACTATGTGGCTTTAGGAGGACGAGCTGCTGTTCGAGACCATGTCTCCATTGTATCCA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTGACTATGTGGCTTTAGGAGGACGAGCTGCTGTTCGAGACCATGTCTCCATTGTATCCA 775
Query 773 AGGTTCGACTTGCGGCTAATAGTTGTGTTACTAAAAACATCACTGAGCCAGGAGATTTTG 832
||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 776 AGGTTCGACTTGCAGCTAATAGTTGTGTTACTAGAAACATCACTGAACCAGGAGATTTTG 835
Query 833 GAGGCTTTCCTGCTGTCCCAATTCACGAATGGAGAAAGCAGATTGTTCGAGCTCAGATTG 892
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GAGGCTTTCCTGCTGTACCAATTCACGAATGGAGAAAGCAGATTGTTCGAGCTCAGATTG 895
Query 893 TGAACAAGAGAAAAA 907
|||||||||| |||
Sbjct 896 CGAACAAGAGAGAAA 910
> AT4G05210.1 | Symbols: | Trimeric LpxA-like enzymes superfamily
protein | chr4:2682867-2684899 FORWARD LENGTH=1025
Length=1025
Score = 564 bits (305), Expect = 6e-160
Identities = 540/648 (83%), Gaps = 38/648 (6%)
Strand=Plus/Plus
Query 209 AAGGGTTTCTAAGATGGAGAAATGGAGGAGGGACATGT--CATAGCTCGGCTCTAATTGA 266
|||| |||||||||||| |||| |||||| ||| |||| ||| | ||||| ||||||||
Sbjct 233 AAGGTTTTCTAAGATGGCGAAACGGAGGA-GGA-ATGTACCATCGTTCGGCCCTAATTGA 290
Query 267 TTCTTCAGCTTTGGTTGAGTTTGGTGCGGTAGTTCATGAAAAAGCTGTCTTAGGTGCGGA 326
||| || ||| ||||||||||||| || || ||||| || ||||| | || || || ||
Sbjct 291 TTCCTCGGCTCTGGTTGAGTTTGGAGCAGTGGTTCACCAAGAAGCTATATTGGGAGCAGA 350
Query 327 GGTTCATGTAGGATCCGGGACTGTAATTGGACCATCAGTTC-AAATCAGTCCTTCCACAA 385
||||||| |||||||| |||||||||||| |||||| || |||| | ||||| || |
Sbjct 351 GGTTCATATAGGATCCAACACTGTAATTGGATCATCAG-TCAAAATTGGCCCTTCTAC-A 408
Query 386 GAATCGGATATAACGTTTCAATCAGCAACTGTAGTATTGGTGATTCT-TGTGTTATCCAC 444
|| | || || |||| |||||||||||||||| | ||||| |||||
Sbjct 409 -AA---G--AT--CG---------GCAATTGTAGTATTGGTGATT-TATGTGTCATCCAT 450
Query 445 AATGGAGTCTGCATAGGTCAAGATGG-TTTCGGTTTTTACGTTGATGAAC-ATGGAAACA 502
|||||||||||||| ||||||||||| ||| || |||||||| |||| || | |||||||
Sbjct 451 AATGGAGTCTGCATTGGTCAAGATGGATTT-GGGTTTTACGTGGATG-ACAACGGAAACA 508
Query 503 TGGTGAAGAAGCCTCAAAAATTAAACGTAAAGATAGGGAATCGTGTTGAAATTGGAGTAA 562
|||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||| ||
Sbjct 509 TGGTGAAGAAGCCTCAAACTTTAAATGTGAAGATAGGGAATCGTGTGGAAATCGGAGCAA 568
Query 563 ATACTTGCATTGATCGAGGCAGCTGGAGAGATACCGTAATCGAAGATGATACTAAGATAG 622
| || ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 569 ACACATGCATTGATCGGGGCAGCTGGAGAGATACCGTGATCGGGGATGATACTAAGATAG 628
Query 623 ACAACTTAGTGCAGATAGGTCACAATGTGATCATAGG-AAAGTGTTGCTTGCTT-TGTGG 680
|||||||||| |||||||||||||||||||| || || ||| ||||||||| || |||||
Sbjct 629 ACAACTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAA-TGTTGCTTG-TTCTGTGG 686
Query 681 TCAAGTAGGCATCGCTGGTTCAGTAACA-ATTGGTGACTATGTGGCTTTAGGAGGACGAG 739
||||||||||| ||||| |||| | | |||||||||| ||| || ||||||||||||
Sbjct 687 CCAAGTAGGCATAGCTGGATCAG-CAGAGATTGGTGACTTTGTAGCACTAGGAGGACGAG 745
Query 740 CT-GCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCGGCTAATAGTTGT 798
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 746 -TAGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCTGCTAATAGTTGT 804
Query 799 GTTACTAAAAACATCACTGAGCCAGGAGATTTTGGAGGCTTTCCTGCT 846
|||||||||||||| || || ||||| |||| || || |||||||||
Sbjct 805 GTTACTAAAAACATTACGGAACCAGGGGATTACGGCGGTTTTCCTGCT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5