BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329483
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR)... 1391 0.0
> AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:11292192-11294009 REVERSE LENGTH=1308
Length=1308
Score = 1391 bits (753), Expect = 0.0
Identities = 893/955 (94%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 1 ATGCTTAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 ATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 143
Query 61 AAGCTCTTCTCCAAAAGGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 120
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 203
Query 121 CGGTCTCCTCGAGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCCAAGGCTGCCAAA 180
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 204 CGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAA 263
Query 181 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTACGGAGCGCTTGAT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 264 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGAT 323
Query 241 TCCTTCATTGCTTGGGAGTTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 383
Query 301 CTTGAAGATGAAAAAGAGTGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 443
Query 361 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 503
Query 421 CGGCTTGACGAAGCTGAGGAATTGTGGAACAAGTTGTTCATGGAACATTTAGAAGGAACT 480
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 504 CGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACT 563
Query 481 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 623
Query 541 CTCTTTGAGGTATTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAACGTTGCGATTGTG 600
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 624 CTCTTCGAGGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTG 683
Query 601 TCTATGGTTGGAAAAGTGTTTGTGAAATTAGAGATGAAGGATAAGTACGAGAAACTGATG 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 684 TCTATGGTTGGAAAAGTGTTTGTGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATG 743
Query 661 AAGAAATATCCTCCACCTCAGTGGGAGTTCAGATACATCAAAGGAAGACGCGTTAAGGTC 720
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 744 AAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTC 803
Query 721 AAGGCAAAGCAGCTAAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGATGAAGAT 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 804 AAGGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGAT 863
Query 781 AAGATTGATACTGAGATTGAGAGTAAATCTAA-AATGTTGTCAGATAAGGAACCAGAGCA 839
|||||||| | ||||||||||||| || || || | || | | |||| | ||
Sbjct 864 AAGATTGACAATGAGATTGAGAGTGAAG--AAGAA-GATG---G-TGAGGATCT----CA 912
Query 840 AGATGGTGAGGATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAATCA 899
| || || | | ||||| | || ||||||||||||||||||||||| |||
Sbjct 913 -G-TGA--AG-A-----G-GAAGA--A-GA---TGAAAAAGAACTTTTGGGTGGAAGTCA 955
Query 900 AGGACAGATTGGAACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 954
|||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGACAGATT--A-CTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5