BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329490
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21120.1 | Symbols: AAT1, CAT1 | amino acid transporter 1 | ... 2881 0.0
> AT4G21120.1 | Symbols: AAT1, CAT1 | amino acid transporter 1
| chr4:11270045-11273973 FORWARD LENGTH=2256
Length=2256
Score = 2881 bits (1560), Expect = 0.0
Identities = 1712/1787 (96%), Gaps = 4/1787 (0%)
Strand=Plus/Plus
Query 16 GGTGGTGGGGACGACGGGCTTCGTCGGCGAGGCTGTTCATGCACAAAAGACGATTTCTTA 75
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGTGGTGGTGACGATGGGCTTCGTCGGCGAGGCTGTTCATGCACAAAAGACGATTTCTTA 342
Query 76 CCGGAGGAATCGTTCCAAAGCATGGGAAATTACCTAAAAGCCCTTAAAGAAACACCGAGT 135
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 343 CCGGAAGAATCGTTCCAAAGCATGGGGAATTACCTAAAAGCCCTTAAAGAAACACCGAGT 402
Query 136 CGGTTCATGGATCGTATTATGACTCGGTCACTAGACTCCGACGAGATTAACGAGATGAAG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CGGTTCATGGATCGTATTATGACTCGGTCACTAGACTCCGACGAGATTAACGAGATGAAG 462
Query 196 GCTCGTAGTGGTCACGAGATGAAGAAAACGTTGACGTGGTGGGATCTGATGTGGTTTGGT 255
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 463 GCTCGTAGTGGTCACGAGATGAAGAAGACGTTGACGTGGTGGGATCTCATGTGGTTTGGT 522
Query 256 ATCGGTGCAGTCATCGGCTCCGGGATATTCGTTCTCACCGGACTCGAAGCACGTAATGC- 314
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 523 ATCGGTGCAGTCATCGGCTCTGGGATATTCGTTCTCACTGGACTCGAAGCACGTAAT-CA 581
Query 315 TTCCGGTCCCGCCGTCGTGTTGTCTTACGTTGTCTCTGGTGTCTCCGCCATGCTCTCCGT 374
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TTCCGGTCCAGCCGTCGTGTTGTCTTACGTTGTCTCTGGTGTCTCCGCCATGCTCTCCGT 641
Query 375 CTTTTGTTACACCGAGTTCGCCGTTGAGATTCCCGTCGCTGGTGGTTCTTTTGCCTACTT 434
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 642 CTTTTGTTACACCGAGTTCGCCGTTGAGATTCCCGTCGCAGGCGGTTCTTTTGCCTACTT 701
Query 435 AAGAGTGGAGCTCGGCGACTTCATGGCCTTCATCGCCGCCGGAAACATAATCCTCGAATA 494
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 702 AAGAGTGGAGCTCGGCGACTTCATGGCCTTCATCGCCGCGGGAAACATAATCCTCGAATA 761
Query 495 CGTCGTTGGCGGAGCTGCCGTGGCTCGATCATGGACCTCTTACTTCGCCACTCTCTTAAA 554
||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 762 CGTTGTCGGTGGAGCTGCCGTGGCTCGATCGTGGACCTCTTACTTCGCCACTCTCTTAAA 821
Query 555 CCACAAACCTGAAGACTTCCGCATCATAGCTCACAGTCTCGGCGAAGACTATAGCCACTT 614
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 822 CCATAAACCTGAAGACTTCCGCATCATAGTTCACAAACTCGGCGAAGACTATAGCCACTT 881
Query 615 AGATCCAATCGCTGTCGGCGTTTGCGCCATCATTTGTGTTTTAGCTGTCCTTGGCACGAA 674
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 882 AGATCCAATAGCCGTCGGCGTTTGCGCCATCATTTGTGTTTTAGCTGTCGTTGGCACAAA 941
Query 675 AGGCTCCTCAAGATTCAATTACATTGCTTCTATAATCCACATGGTCGTGATTCTCTTTGT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AGGCTCCTCAAGATTCAATTACATTGCTTCTATAATCCACATGGTCGTGATTCTCTTTGT 1001
Query 735 CATCATCGCCGGATTTACTAAAGCCGATGTGAAAAACTACAGCGATTTCACTCCTTATGG 794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1002 TATCATCGCCGGATTTACTAAAGCCGATGTGAAAAACTACAGCGATTTCACTCCTTACGG 1061
Query 795 AGTTAGAGGAGTGTTTAAATCCGCTGCGGTTCTTTTCTTTGCCTATATTGGATTTGATGC 854
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1062 CGTTAGAGGAGTGTTTAAATCCGCCGCGGTTCTTTTCTTTGCCTATATTGGATTTGATGC 1121
Query 855 GGTTTCAACGATGGCTGAGGAGACAAAGAATCCAGGGAGAGATATTCCGATTGGTCTTGT 914
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1122 GGTTTCAACGATGGCTGAGGAGACAAAGAATCCAGGGAGAGATATTCCTATTGGTCTTGT 1181
Query 915 TGGATCGATGGTGGTTACTACAGTTTGTTATTGTCTCATGGCGGTTGTGTTGTGTCTTAT 974
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1182 TGGATCGATGGTGGTTACTACGGTTTGTTATTGTCTCATGGCGGTTACGTTGTGTCTTAT 1241
Query 975 GCAACCGTTTCAACAGATTGATCCGGACGCGCCATTCTCAGTTGCGTTTTCTGCGGTTGG 1034
||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1242 GCAGCCGTATCAACAGATTGATCCGGACGCGCCATTCTCGGTTGCGTTTTCTGCCGTTGG 1301
Query 1035 ATGGGATTGGGCTAAGTACATTGTCGCGTTTGGTGCTCTTAAAGGTATGACGACAGTTTT 1094
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1302 ATGGGATTGGGCTAAGTACATTGTCGCCTTTGGGGCTCTTAAAGGTATGACGACGGTTTT 1361
Query 1095 GTTAGTTGGAGCCATTGGTCAAGCTAGGTACATGACACACATAGCCAGGGCCCATATGAT 1154
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1362 GTTAGTTGGGGCCATTGGTCAAGCTAGGTACATGACACACATAGCCCGAGCCCATATGAT 1421
Query 1155 GCCTCCATGGCTAGCTCAAGTCAACGCAAAGACCGGAACACCAATTAACGCGACCGTGGT 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GCCTCCATGGCTAGCTCAAGTCAACGCAAAGACCGGAACACCAATTAACGCGACCGTGGT 1481
Query 1215 AATGCTTGCCGCTACAGCTCTCATAGCATTCTTCACAAAACTGAAAATTTTAGCCGATCT 1274
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AATGCTTGCCGCGACAGCTCTCATAGCATTCTTCACAAAACTGAAAATTTTAGCCGATCT 1541
Query 1275 CTTGTCTGTTTCCACACTTTTCATCTTCATGTTCGTTGCTGTGGCTCTTCTCGTCAGAAG 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1542 CTTGTCTGTTTCCACACTTTTCATCTTCATGTTCGTTGCTGTGGCTCTTCTCGTTAGAAG 1601
Query 1335 ATATTACGTCACGGGAGAAACATCGTCCCGTGACCGTAACAAGTTTTTAGTGTTCTTAGG 1394
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1602 ATATTACGTCACCGGAGAAACATCGACCCGTGACCGTAACAAGTTTTTAGTGTTCTTAGG 1661
Query 1395 TTTGATTCTTGCGTCCTCGACCGCCACTGGTGTTTATTGGGCTTTGGAAAAAGAGGGTTG 1454
|||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||
Sbjct 1662 TTTGATTCTTGCGTCCTCTACCGCGACTGCTGTTTATTGGGCTTTGGAAGAAGAAGGTTG 1721
Query 1455 GATTGGGTATTGCATTACGGTTCCTATATGGTTTCTGTCTACAGCTGGGATGAAGTTTCT 1514
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1722 GATTGGGTATTGCATTACGGTTCCTATATGGTTTCTGTCTACGGTTGCCATGAAGTTTCT 1781
Query 1515 TGTACCGCAAGCTAGGGCTCCCAAAATTTGGGGTGTTCCTTTGGTTCCGTGGTTGCCTTC 1574
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1782 TGTACCGCAAGCTAGGGCTCCGAAAATTTGGGGTGTTCCTTTGGTTCCGTGGTTGCCTTC 1841
Query 1575 TGCTTCGATCGCTATTAATATCTTTCTACTTGGTTCCATCGATAAAAAATCGTTCGTTAG 1634
|||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 1842 TGCTTCCATCGCTATTAATATCTTCCTTCTTGGTTCCATCGATACAAAATCGTTCGTTAG 1901
Query 1635 GTTTGCAATCTGGACAGGTATTCTTCTCGTATATTACGTCTTGTTTGGATTGCACGCAAC 1694
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1902 GTTTGCAATCTGGACAGGTATTCTGCTCATATATTACGTCTTGTTTGGGTTGCACGCAAC 1961
Query 1695 TTACGATACAGCTAAGGCGACGTTGAAGGAGAAGCTGACGTTGCAGAAAGCTGAGGAAGG 1754
|| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1962 GTATGATACAGCTAAGGCGACGTTGAAGGAGAAGCAGGCATTGCAGAAAGCTGAGGAAGG 2021
Query 1755 TGGTGTTGTTGCTGACAATTCTGGTTCTGCAACTGTA-GATCACTAG 1800
||||||||||||||| |||||| ||||||||||| || | |||||||
Sbjct 2022 TGGTGTTGTTGCTGATAATTCTTGTTCTGCAACT-TAAGCTCACTAG 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5