BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329492
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21105.1 | Symbols: | cytochrome-c oxidases;electron carrie... 350 4e-96
> AT4G21105.1 | Symbols: | cytochrome-c oxidases;electron carriers
| chr4:11265651-11266971 FORWARD LENGTH=550
Length=550
Score = 350 bits (189), Expect = 4e-96
Identities = 201/207 (97%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 1 ATGGTGACTGAAACTCCATTTAGGCCACGAGAGAAGCTTCTGGAGAAGCAGAGATTGTTC 60
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 97 ATGTTGACTGAAACTCCATTTAGGCCACGAGAGAAGCTTCTGGAGAAACAGAGATTGTTC 156
Query 61 CAGAGCATCCAGAGGCACACTTACTTGAAAGGACCAATGGACAAGATCACTTCCGTTGCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 157 CAGAGCATCCAAAGGCACACTTACTTGAAAGGACCAATGGACAAGATCACTTCTGTTGCT 216
Query 121 ATTCCCATTGCCTTGGCTGCAAGTTCTCTCTACATGATTGGAACAGGAATCTACAACATG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATTCCTATTGCCTTGGCTGCAAGTTCTCTCTACATGATTGGAACAGGAATCTACAACATG 276
Query 181 TCTAATGGAATCGGCAAAAAGGAATAA 207
|| ||||||||||||||||||||||||
Sbjct 277 TCGAATGGAATCGGCAAAAAGGAATAA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9255448584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5